Gene annotation
Transcriptome id Sobic.004G075100.1
Synonym
Functional annotation -
UniProt A0A194YNB8
Pfam -
Panther DB PTHR33511 PTHR33511:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g42620.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G075100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G191500 protein transport protein Sec61 subunit beta, putative, expressed K09481: SEC61B, protein transport protein SEC61 subunit beta
2 Sobic.002G338250 - -
3 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
4 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
5 Sobic.009G063900 expressed protein -
6 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
7 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
8 Sobic.004G259600 slowmo homolog, putative, expressed -
9 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
10 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
11 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
13 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
14 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.009G234000 expressed protein -
16 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
17 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
18 Sobic.005G140200 dehydrogenase, putative, expressed -
19 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
20 Sobic.010G183201 - -


Gene co-expression network
sample Sobic004G075100 Sobic004G075100 Sobic003G191500 Sobic003G191500 Sobic004G075100--Sobic003G191500 Sobic002G338250 Sobic002G338250 Sobic004G075100--Sobic002G338250 Sobic009G216800 Sobic009G216800 Sobic004G075100--Sobic009G216800 Sobic002G362000 Sobic002G362000 Sobic004G075100--Sobic002G362000 Sobic009G063900 Sobic009G063900 Sobic004G075100--Sobic009G063900 Sobic001G389900 Sobic001G389900 Sobic004G075100--Sobic001G389900 Sobic003G357100 Sobic003G357100 Sobic004G075100--Sobic003G357100 Sobic004G259600 Sobic004G259600 Sobic004G075100--Sobic004G259600 Sobic006G239300 Sobic006G239300 Sobic004G075100--Sobic006G239300 Sobic003G317100 Sobic003G317100 Sobic003G191500--Sobic003G317100 Sobic003G072300 Sobic003G072300 Sobic003G191500--Sobic003G072300 Sobic003G191500--Sobic009G063900 Sobic004G205100 Sobic004G205100 Sobic003G191500--Sobic004G205100 Sobic003G041200 Sobic003G041200 Sobic003G191500--Sobic003G041200 Sobic003G352300 Sobic003G352300 Sobic003G191500--Sobic003G352300 Sobic002G104900 Sobic002G104900 Sobic003G191500--Sobic002G104900 Sobic006G084600 Sobic006G084600 Sobic003G191500--Sobic006G084600 Sobic003G191500--Sobic004G259600 Sobic007G074200 Sobic007G074200 Sobic002G338250--Sobic007G074200 Sobic004G117600 Sobic004G117600 Sobic002G338250--Sobic004G117600 Sobic009G154200 Sobic009G154200 Sobic002G338250--Sobic009G154200 Sobic002G393600 Sobic002G393600 Sobic002G338250--Sobic002G393600 Sobic008G111500 Sobic008G111500 Sobic002G338250--Sobic008G111500 Sobic002G338250--Sobic001G389900 Sobic003G349700 Sobic003G349700 Sobic002G338250--Sobic003G349700 Sobic001G447100 Sobic001G447100 Sobic002G338250--Sobic001G447100 Sobic006G136800 Sobic006G136800 Sobic002G338250--Sobic006G136800 Sobic002G372400 Sobic002G372400 Sobic009G216800--Sobic002G372400 Sobic002G348100 Sobic002G348100 Sobic009G216800--Sobic002G348100 Sobic003G078200 Sobic003G078200 Sobic009G216800--Sobic003G078200 Sobic002G251900 Sobic002G251900 Sobic009G216800--Sobic002G251900 Sobic008G186600 Sobic008G186600 Sobic009G216800--Sobic008G186600 Sobic004G055700 Sobic004G055700 Sobic009G216800--Sobic004G055700 Sobic009G216800--Sobic006G136800 Sobic001G403500 Sobic001G403500 Sobic009G216800--Sobic001G403500 Sobic003G109600 Sobic003G109600 Sobic009G216800--Sobic003G109600 Sobic010G262300 Sobic010G262300 Sobic002G362000--Sobic010G262300 Sobic001G308700 Sobic001G308700 Sobic002G362000--Sobic001G308700 Sobic002G362000--Sobic006G239300 Sobic004G123000 Sobic004G123000 Sobic002G362000--Sobic004G123000 Sobic001G513300 Sobic001G513300 Sobic002G362000--Sobic001G513300 Sobic002G183400 Sobic002G183400 Sobic002G362000--Sobic002G183400 Sobic002G362000--Sobic004G259600 Sobic002G362000--Sobic009G063900 Sobic003G273000 Sobic003G273000 Sobic002G362000--Sobic003G273000 Sobic006G275200 Sobic006G275200 Sobic009G063900--Sobic006G275200 Sobic001G097600 Sobic001G097600 Sobic009G063900--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic009G063900--Sobic002G393000 Sobic003G086600 Sobic003G086600 Sobic009G063900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic009G063900--Sobic004G280200 Sobic009G063900--Sobic004G205100 Sobic009G183400 Sobic009G183400 Sobic009G063900--Sobic009G183400 Sobic001G405500 Sobic001G405500 Sobic009G063900--Sobic001G405500 Sobic001G309600 Sobic001G309600 Sobic009G063900--Sobic001G309600 Sobic003G403400 Sobic003G403400 Sobic001G389900--Sobic003G403400 Sobic009G232800 Sobic009G232800 Sobic001G389900--Sobic009G232800 Sobic001G477300 Sobic001G477300 Sobic001G389900--Sobic001G477300 Sobic002G046100 Sobic002G046100 Sobic001G389900--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic001G389900--Sobic004G177700 Sobic001G389900--Sobic009G063900 Sobic001G066700 Sobic001G066700 Sobic001G389900--Sobic001G066700 Sobic001G389900--Sobic001G447100 Sobic001G389900--Sobic003G072300 Sobic001G389000 Sobic001G389000 Sobic003G357100--Sobic001G389000 Sobic005G103300 Sobic005G103300 Sobic003G357100--Sobic005G103300 Sobic001G516600 Sobic001G516600 Sobic003G357100--Sobic001G516600 Sobic009G159400 Sobic009G159400 Sobic003G357100--Sobic009G159400 Sobic001G115300 Sobic001G115300 Sobic003G357100--Sobic001G115300 Sobic002G082600 Sobic002G082600 Sobic003G357100--Sobic002G082600 Sobic003G357100--Sobic002G104900 Sobic009G179900 Sobic009G179900 Sobic003G357100--Sobic009G179900 Sobic001G119000 Sobic001G119000 Sobic003G357100--Sobic001G119000 Sobic004G247200 Sobic004G247200 Sobic004G259600--Sobic004G247200 Sobic004G259600--Sobic002G348100 Sobic003G063200 Sobic003G063200 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700 Sobic006G239300--Sobic010G262300 Sobic006G239300--Sobic004G123000 Sobic010G153100 Sobic010G153100 Sobic006G239300--Sobic010G153100 Sobic003G358300 Sobic003G358300 Sobic006G239300--Sobic003G358300 Sobic006G239300--Sobic001G066700 Sobic006G239300--Sobic001G389900 Sobic006G062800 Sobic006G062800 Sobic006G239300--Sobic006G062800 Sobic006G239300--Sobic003G072300 Sobic006G239300--Sobic002G362000
Octagon: transcription factors


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