Gene annotation
Transcriptome id Sobic.003G191500.1
Synonym Sb03g025540, SEC61BETA
Functional annotation protein transport protein Sec61 subunit beta, putative, expressed
UniProt C5XNN9
Pfam PF03911
Panther DB PTHR13509 PTHR13509:SF2
NCBI CDD -
KEGG Orthology K09481; SEC61B, protein transport protein SEC61 subunit beta
Gene Ontology GO:0006886; intracellular protein transport GO:0005784Sec61 translocon complex


Orthologs (automatic annotation)
TAIR AT3G60540 : Preprotein translocase Sec, Sec61-beta subunit protein
RAP-DB (Rice) LOC_Os01g38510.1 : protein transport protein Sec61 subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a038372
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G191500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G317100 expressed protein -
2 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
3 Sobic.009G063900 expressed protein -
4 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
5 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
7 Sobic.002G104900 B12D protein, putative, expressed -
8 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
9 Sobic.004G259600 slowmo homolog, putative, expressed -
10 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
11 Sobic.004G061200 expressed protein -
12 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
13 Sobic.001G365100 lipase, putative, expressed -
14 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
15 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
16 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
17 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
18 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
19 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
20 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -


Gene co-expression network
sample Sobic003G191500 Sobic003G191500 Sobic003G317100 Sobic003G317100 Sobic003G191500--Sobic003G317100 Sobic003G072300 Sobic003G072300 Sobic003G191500--Sobic003G072300 Sobic009G063900 Sobic009G063900 Sobic003G191500--Sobic009G063900 Sobic004G205100 Sobic004G205100 Sobic003G191500--Sobic004G205100 Sobic003G041200 Sobic003G041200 Sobic003G191500--Sobic003G041200 Sobic003G352300 Sobic003G352300 Sobic003G191500--Sobic003G352300 Sobic002G104900 Sobic002G104900 Sobic003G191500--Sobic002G104900 Sobic006G084600 Sobic006G084600 Sobic003G191500--Sobic006G084600 Sobic004G259600 Sobic004G259600 Sobic003G191500--Sobic004G259600 Sobic003G286600 Sobic003G286600 Sobic003G317100--Sobic003G286600 Sobic006G099900 Sobic006G099900 Sobic003G317100--Sobic006G099900 Sobic003G317100--Sobic006G084600 Sobic004G221500 Sobic004G221500 Sobic003G317100--Sobic004G221500 Sobic003G317100--Sobic003G352300 Sobic005G045900 Sobic005G045900 Sobic003G317100--Sobic005G045900 Sobic001G435000 Sobic001G435000 Sobic003G317100--Sobic001G435000 Sobic010G044400 Sobic010G044400 Sobic003G317100--Sobic010G044400 Sobic004G229800 Sobic004G229800 Sobic003G317100--Sobic004G229800 Sobic002G081600 Sobic002G081600 Sobic003G072300--Sobic002G081600 Sobic003G072300--Sobic004G205100 Sobic002G187500 Sobic002G187500 Sobic003G072300--Sobic002G187500 Sobic003G209000 Sobic003G209000 Sobic003G072300--Sobic003G209000 Sobic002G190900 Sobic002G190900 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G072300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500 Sobic006G275200 Sobic006G275200 Sobic009G063900--Sobic006G275200 Sobic001G097600 Sobic001G097600 Sobic009G063900--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic009G063900--Sobic002G393000 Sobic003G086600 Sobic003G086600 Sobic009G063900--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic009G063900--Sobic004G280200 Sobic009G063900--Sobic004G205100 Sobic009G183400 Sobic009G183400 Sobic009G063900--Sobic009G183400 Sobic001G405500 Sobic001G405500 Sobic009G063900--Sobic001G405500 Sobic001G309600 Sobic001G309600 Sobic009G063900--Sobic001G309600 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic007G184600 Sobic007G184600 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic004G205100--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic004G205100--Sobic003G417800 Sobic002G336600 Sobic002G336600 Sobic003G041200--Sobic002G336600 Sobic007G155000 Sobic007G155000 Sobic003G041200--Sobic007G155000 Sobic003G041200--Sobic001G435000 Sobic003G041200--Sobic009G159400 Sobic009G234100 Sobic009G234100 Sobic003G041200--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic003G041200--Sobic004G208700 Sobic001G038900 Sobic001G038900 Sobic003G041200--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic003G041200--Sobic006G158600 Sobic004G061200 Sobic004G061200 Sobic003G041200--Sobic004G061200 Sobic003G352300--Sobic004G205100 Sobic010G259600 Sobic010G259600 Sobic003G352300--Sobic010G259600 Sobic002G125700 Sobic002G125700 Sobic003G352300--Sobic002G125700 Sobic003G352300--Sobic009G159400 Sobic001G503100 Sobic001G503100 Sobic003G352300--Sobic001G503100 Sobic003G352300--Sobic006G092500 Sobic003G352300--Sobic009G183400 Sobic003G352300--Sobic006G099900 Sobic003G352300--Sobic003G417800 Sobic001G317000 Sobic001G317000 Sobic002G104900--Sobic001G317000 Sobic007G145600 Sobic007G145600 Sobic002G104900--Sobic007G145600 Sobic010G178500 Sobic010G178500 Sobic002G104900--Sobic010G178500 Sobic001G015100 Sobic001G015100 Sobic002G104900--Sobic001G015100 Sobic009G141800 Sobic009G141800 Sobic002G104900--Sobic009G141800 Sobic002G140400 Sobic002G140400 Sobic002G104900--Sobic002G140400 Sobic004G088551 Sobic004G088551 Sobic002G104900--Sobic004G088551 Sobic003G094200 Sobic003G094200 Sobic002G104900--Sobic003G094200 Sobic002G263400 Sobic002G263400 Sobic002G104900--Sobic002G263400 Sobic006G084600--Sobic004G221500 Sobic007G067350 Sobic007G067350 Sobic006G084600--Sobic007G067350 Sobic007G155100 Sobic007G155100 Sobic006G084600--Sobic007G155100 Sobic006G084600--Sobic003G317100 Sobic003G437200 Sobic003G437200 Sobic006G084600--Sobic003G437200 Sobic007G066932 Sobic007G066932 Sobic006G084600--Sobic007G066932 Sobic001G348700 Sobic001G348700 Sobic006G084600--Sobic001G348700 Sobic010G084300 Sobic010G084300 Sobic006G084600--Sobic010G084300 Sobic001G231600 Sobic001G231600 Sobic006G084600--Sobic001G231600 Sobic004G247200 Sobic004G247200 Sobic004G259600--Sobic004G247200 Sobic002G348100 Sobic002G348100 Sobic004G259600--Sobic002G348100 Sobic003G063200 Sobic003G063200 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.