Gene annotation
Transcriptome id Sobic.001G148700.1
Synonym Sb01g012940
Functional annotation signal peptidase complex subunit 1, putative, expressed
UniProt C5WQG8
Pfam PF06645
Panther DB PTHR13202 PTHR13202:SF0
NCBI CDD KOG4112; Signal peptidase subunit
KEGG Orthology K12946; signal peptidase complex subunit 1
Gene Ontology GO:0016021; integral component of membrane GO:0008233peptidase activity GO:0006465signal peptide processing GO:0005787signal peptidase complex


Orthologs (automatic annotation)
TAIR AT4G40042 : Microsomal signal peptidase 12 kDa subunit (SPC12)
RAP-DB (Rice) LOC_Os12g25210.1 : signal peptidase complex subunit 1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ86812
Barley HORVU3Hr1G087090.9 , HORVU3Hr1G087090.8 , HORVU3Hr1G087090.7 , HORVU3Hr1G087090.6 , HORVU3Hr1G087090.5 , HORVU3Hr1G087090.4 , HORVU3Hr1G087090.3 , HORVU3Hr1G087090.2 , HORVU3Hr1G087090.1 , HORVU3Hr1G087090.10
Wheat -
Populus -


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cDNA sequences
Sobic.001G148700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
2 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
3 Sobic.010G262300 coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed -
4 Sobic.001G134200 expressed protein -
5 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
6 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
7 Sobic.004G259600 slowmo homolog, putative, expressed -
8 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
9 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
10 Sobic.010G217900 diphthamide biosynthesis protein 3, putative, expressed K15455: DPH3, diphthamide biosynthesis protein 3
11 Sobic.002G296200 expressed protein -
12 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.001G286300 - -
14 Sobic.003G296800 expressed protein -
15 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
16 Sobic.009G077100 expressed protein -
17 Sobic.001G536500 expressed protein -
18 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
19 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
20 Sobic.009G234000 expressed protein -


Gene co-expression network
sample Sobic001G148700 Sobic001G148700 Sobic004G063500 Sobic004G063500 Sobic001G148700--Sobic004G063500 Sobic001G441000 Sobic001G441000 Sobic001G148700--Sobic001G441000 Sobic010G262300 Sobic010G262300 Sobic001G148700--Sobic010G262300 Sobic001G134200 Sobic001G134200 Sobic001G148700--Sobic001G134200 Sobic009G149800 Sobic009G149800 Sobic001G148700--Sobic009G149800 Sobic001G067601 Sobic001G067601 Sobic001G148700--Sobic001G067601 Sobic004G259600 Sobic004G259600 Sobic001G148700--Sobic004G259600 Sobic007G161700 Sobic007G161700 Sobic001G148700--Sobic007G161700 Sobic001G031800 Sobic001G031800 Sobic001G148700--Sobic001G031800 Sobic009G120100 Sobic009G120100 Sobic004G063500--Sobic009G120100 Sobic003G325700 Sobic003G325700 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic009G216800 Sobic009G216800 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic002G113500 Sobic002G113500 Sobic004G063500--Sobic002G113500 Sobic006G231700 Sobic006G231700 Sobic004G063500--Sobic006G231700 Sobic003G368500 Sobic003G368500 Sobic001G441000--Sobic003G368500 Sobic009G171100 Sobic009G171100 Sobic001G441000--Sobic009G171100 Sobic007G091000 Sobic007G091000 Sobic001G441000--Sobic007G091000 Sobic004G247200 Sobic004G247200 Sobic001G441000--Sobic004G247200 Sobic010G213400 Sobic010G213400 Sobic001G441000--Sobic010G213400 Sobic001G533300 Sobic001G533300 Sobic001G441000--Sobic001G533300 Sobic001G224400 Sobic001G224400 Sobic001G441000--Sobic001G224400 Sobic010G217900 Sobic010G217900 Sobic001G441000--Sobic010G217900 Sobic004G026200 Sobic004G026200 Sobic001G441000--Sobic004G026200 Sobic006G239300 Sobic006G239300 Sobic010G262300--Sobic006G239300 Sobic001G308700 Sobic001G308700 Sobic010G262300--Sobic001G308700 Sobic002G362000 Sobic002G362000 Sobic010G262300--Sobic002G362000 Sobic004G030501 Sobic004G030501 Sobic010G262300--Sobic004G030501 Sobic010G262300--Sobic001G148700 Sobic004G123000 Sobic004G123000 Sobic010G262300--Sobic004G123000 Sobic006G118400 Sobic006G118400 Sobic010G262300--Sobic006G118400 Sobic010G262300--Sobic001G067601 Sobic001G513300 Sobic001G513300 Sobic010G262300--Sobic001G513300 Sobic001G134200--Sobic001G031800 Sobic007G013900 Sobic007G013900 Sobic001G134200--Sobic007G013900 Sobic002G260200 Sobic002G260200 Sobic001G134200--Sobic002G260200 Sobic004G183200 Sobic004G183200 Sobic001G134200--Sobic004G183200 Sobic001G134200--Sobic001G148700 Sobic003G296800 Sobic003G296800 Sobic001G134200--Sobic003G296800 Sobic002G263100 Sobic002G263100 Sobic001G134200--Sobic002G263100 Sobic002G309700 Sobic002G309700 Sobic001G134200--Sobic002G309700 Sobic004G159000 Sobic004G159000 Sobic001G134200--Sobic004G159000 Sobic003G024500 Sobic003G024500 Sobic009G149800--Sobic003G024500 Sobic009G149800--Sobic001G148700 Sobic002G378401 Sobic002G378401 Sobic009G149800--Sobic002G378401 Sobic009G149800--Sobic003G403400 Sobic009G149800--Sobic010G217900 Sobic009G149800--Sobic003G063200 Sobic004G015400 Sobic004G015400 Sobic009G149800--Sobic004G015400 Sobic008G111500 Sobic008G111500 Sobic009G149800--Sobic008G111500 Sobic009G149800--Sobic004G063500 Sobic001G019900 Sobic001G019900 Sobic001G067601--Sobic001G019900 Sobic009G023200 Sobic009G023200 Sobic001G067601--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic001G067601--Sobic002G046100 Sobic001G067601--Sobic010G217900 Sobic001G067601--Sobic003G063200 Sobic001G037000 Sobic001G037000 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic003G181500 Sobic003G181500 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic004G259600--Sobic004G247200 Sobic002G348100 Sobic002G348100 Sobic004G259600--Sobic002G348100 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic001G055600 Sobic001G055600 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic010G204600 Sobic010G204600 Sobic004G259600--Sobic010G204600 Sobic005G028700 Sobic005G028700 Sobic004G259600--Sobic005G028700 Sobic002G296200 Sobic002G296200 Sobic007G161700--Sobic002G296200 Sobic007G161700--Sobic003G296800 Sobic001G286200 Sobic001G286200 Sobic007G161700--Sobic001G286200 Sobic007G161700--Sobic002G263100 Sobic009G173500 Sobic009G173500 Sobic007G161700--Sobic009G173500 Sobic007G134900 Sobic007G134900 Sobic007G161700--Sobic007G134900 Sobic006G013000 Sobic006G013000 Sobic007G161700--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic007G161700--Sobic001G047800 Sobic002G308300 Sobic002G308300 Sobic007G161700--Sobic002G308300 Sobic001G031800--Sobic001G134200 Sobic001G031800--Sobic002G263100 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic001G031800--Sobic007G013900 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001
Octagon: transcription factors


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