Gene annotation
Transcriptome id Sobic.005G140200.1
Synonym Sb05g020410
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1Z5RJ15
Pfam PF08240 PF13602
Panther DB PTHR11695 PTHR11695:SF594
NCBI CDD KOG1198; Zinc-binding oxidoreductase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G13010 : Oxidoreductase, zinc-binding dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g30420.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a055819
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G339700 expressed protein -
2 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
3 Sobic.002G355700 histone H3, putative, expressed K11253: histone H3
4 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
5 Sobic.006G039600 expressed protein -
6 Sobic.001G533400 major facilitator superfamily domain-containing protein 5, putative, expressed -
7 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
8 Sobic.004G075100 - -
9 Sobic.005G058800 plant neutral invertase domain containing protein, expressed -
10 Sobic.003G357100 phosphatidic acid phosphatase-related, putative, expressed -
11 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.010G001900 Long chain acyl-CoA oxidase(PubMedID : 18985313)@acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
14 Sobic.001G022300 expressed protein K17422: large subunit ribosomal protein L41
15 Sobic.003G087300 nuclease PA3, putative, expressed -
16 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
17 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
18 Sobic.001G077000 similar to Cold acclimation protein COR413-PM1(PubMedID : 29862293)@cold acclimation protein WCOR413, putative, expressed -
19 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase
20 Sobic.002G386800 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic005G140200 Sobic005G140200 Sobic001G339700 Sobic001G339700 Sobic005G140200--Sobic001G339700 Sobic002G362000 Sobic002G362000 Sobic005G140200--Sobic002G362000 Sobic002G355700 Sobic002G355700 Sobic005G140200--Sobic002G355700 Sobic007G145600 Sobic007G145600 Sobic005G140200--Sobic007G145600 Sobic006G039600 Sobic006G039600 Sobic005G140200--Sobic006G039600 Sobic001G533400 Sobic001G533400 Sobic005G140200--Sobic001G533400 Sobic010G239300 Sobic010G239300 Sobic005G140200--Sobic010G239300 Sobic004G075100 Sobic004G075100 Sobic005G140200--Sobic004G075100 Sobic005G058800 Sobic005G058800 Sobic005G140200--Sobic005G058800 Sobic001G339700--Sobic001G533400 Sobic001G317200 Sobic001G317200 Sobic001G339700--Sobic001G317200 Sobic001G339700--Sobic007G145600 Sobic010G084400 Sobic010G084400 Sobic001G339700--Sobic010G084400 Sobic003G252800 Sobic003G252800 Sobic001G339700--Sobic003G252800 Sobic006G099900 Sobic006G099900 Sobic001G339700--Sobic006G099900 Sobic008G025600 Sobic008G025600 Sobic001G339700--Sobic008G025600 Sobic005G101800 Sobic005G101800 Sobic001G339700--Sobic005G101800 Sobic005G084600 Sobic005G084600 Sobic001G339700--Sobic005G084600 Sobic010G262300 Sobic010G262300 Sobic002G362000--Sobic010G262300 Sobic001G308700 Sobic001G308700 Sobic002G362000--Sobic001G308700 Sobic006G239300 Sobic006G239300 Sobic002G362000--Sobic006G239300 Sobic004G123000 Sobic004G123000 Sobic002G362000--Sobic004G123000 Sobic001G513300 Sobic001G513300 Sobic002G362000--Sobic001G513300 Sobic002G183400 Sobic002G183400 Sobic002G362000--Sobic002G183400 Sobic004G259600 Sobic004G259600 Sobic002G362000--Sobic004G259600 Sobic009G063900 Sobic009G063900 Sobic002G362000--Sobic009G063900 Sobic003G273000 Sobic003G273000 Sobic002G362000--Sobic003G273000 Sobic009G231000 Sobic009G231000 Sobic002G355700--Sobic009G231000 Sobic003G352300 Sobic003G352300 Sobic002G355700--Sobic003G352300 Sobic002G415100 Sobic002G415100 Sobic002G355700--Sobic002G415100 Sobic002G034800 Sobic002G034800 Sobic002G355700--Sobic002G034800 Sobic004G205100 Sobic004G205100 Sobic002G355700--Sobic004G205100 Sobic002G125700 Sobic002G125700 Sobic002G355700--Sobic002G125700 Sobic003G087300 Sobic003G087300 Sobic002G355700--Sobic003G087300 Sobic002G355700--Sobic010G239300 Sobic001G115300 Sobic001G115300 Sobic002G355700--Sobic001G115300 Sobic007G145600--Sobic001G317200 Sobic007G145600--Sobic010G239300 Sobic007G145600--Sobic001G339700 Sobic001G119100 Sobic001G119100 Sobic007G145600--Sobic001G119100 Sobic002G104900 Sobic002G104900 Sobic007G145600--Sobic002G104900 Sobic007G145600--Sobic010G084400 Sobic010G178500 Sobic010G178500 Sobic007G145600--Sobic010G178500 Sobic001G252300 Sobic001G252300 Sobic007G145600--Sobic001G252300 Sobic007G145600--Sobic003G252800 Sobic004G273100 Sobic004G273100 Sobic006G039600--Sobic004G273100 Sobic006G039600--Sobic005G058800 Sobic001G118300 Sobic001G118300 Sobic006G039600--Sobic001G118300 Sobic009G069600 Sobic009G069600 Sobic006G039600--Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic006G039600--Sobic010G031000 Sobic007G016100 Sobic007G016100 Sobic006G039600--Sobic007G016100 Sobic001G508466 Sobic001G508466 Sobic006G039600--Sobic001G508466 Sobic009G128700 Sobic009G128700 Sobic006G039600--Sobic009G128700 Sobic006G039600--Sobic001G533400 Sobic001G533400--Sobic001G339700 Sobic010G001900 Sobic010G001900 Sobic001G533400--Sobic010G001900 Sobic001G533400--Sobic001G119100 Sobic002G201600 Sobic002G201600 Sobic001G533400--Sobic002G201600 Sobic001G533400--Sobic008G025600 Sobic001G533400--Sobic004G205100 Sobic005G091500 Sobic005G091500 Sobic001G533400--Sobic005G091500 Sobic001G119000 Sobic001G119000 Sobic001G533400--Sobic001G119000 Sobic001G533400--Sobic001G252300 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic010G239300--Sobic009G128700 Sobic010G239300--Sobic010G084400 Sobic002G416600 Sobic002G416600 Sobic010G239300--Sobic002G416600 Sobic010G239300--Sobic003G087300 Sobic010G239300--Sobic007G145600 Sobic010G239300--Sobic006G099900 Sobic010G239300--Sobic005G101800 Sobic003G191500 Sobic003G191500 Sobic004G075100--Sobic003G191500 Sobic002G338250 Sobic002G338250 Sobic004G075100--Sobic002G338250 Sobic009G216800 Sobic009G216800 Sobic004G075100--Sobic009G216800 Sobic004G075100--Sobic002G362000 Sobic004G075100--Sobic009G063900 Sobic001G389900 Sobic001G389900 Sobic004G075100--Sobic001G389900 Sobic003G357100 Sobic003G357100 Sobic004G075100--Sobic003G357100 Sobic004G075100--Sobic004G259600 Sobic004G075100--Sobic006G239300 Sobic010G209900 Sobic010G209900 Sobic005G058800--Sobic010G209900 Sobic005G058800--Sobic001G339700 Sobic005G058800--Sobic005G084600 Sobic004G176600 Sobic004G176600 Sobic005G058800--Sobic004G176600 Sobic002G375400 Sobic002G375400 Sobic005G058800--Sobic002G375400 Sobic005G058800--Sobic001G533400 Sobic001G243600 Sobic001G243600 Sobic005G058800--Sobic001G243600 Sobic008G112600 Sobic008G112600 Sobic005G058800--Sobic008G112600 Sobic009G106800 Sobic009G106800 Sobic005G058800--Sobic009G106800
Octagon: transcription factors


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