Gene annotation
Transcriptome id Sobic.001G022300.1
Synonym Sb01g002120
Functional annotation expressed protein
UniProt C5WTX9
Pfam PF09809
Panther DB PTHR21338
NCBI CDD -
KEGG Orthology K17422; large subunit ribosomal protein L41
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40080 : Mitochondrial ribosomal protein L27
RAP-DB (Rice) LOC_Os02g40490.1 : expressed protein
MaizeGDB (Corn) Zm00025a016371 , Zm00025a004732
Brachypodium KQK00362 , KQK00363
Barley HORVU6Hr1G057580.1 , HORVU6Hr1G057580.2
Wheat TraesCS6D02G207000 , TraesCS6A02G228000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
2 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
3 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
4 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
5 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.004G138300 expressed protein -
7 Sobic.008G175100 expressed protein K17422: large subunit ribosomal protein L41
8 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
9 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
10 Sobic.009G001900 expressed protein -
11 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
12 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
13 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
14 Sobic.007G141100 expressed protein K18179: cytochrome c oxidase assembly factor 6
15 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
16 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
17 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
18 Sobic.003G128200 expressed protein -
19 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
20 Sobic.001G050400 expressed protein -


Gene co-expression network
sample Sobic001G022300 Sobic001G022300 Sobic008G136800 Sobic008G136800 Sobic001G022300--Sobic008G136800 Sobic006G203900 Sobic006G203900 Sobic001G022300--Sobic006G203900 Sobic003G442400 Sobic003G442400 Sobic001G022300--Sobic003G442400 Sobic006G124300 Sobic006G124300 Sobic001G022300--Sobic006G124300 Sobic005G091700 Sobic005G091700 Sobic001G022300--Sobic005G091700 Sobic004G138300 Sobic004G138300 Sobic001G022300--Sobic004G138300 Sobic008G175100 Sobic008G175100 Sobic001G022300--Sobic008G175100 Sobic001G030300 Sobic001G030300 Sobic001G022300--Sobic001G030300 Sobic004G103700 Sobic004G103700 Sobic001G022300--Sobic004G103700 Sobic008G136800--Sobic006G203900 Sobic009G001900 Sobic009G001900 Sobic008G136800--Sobic009G001900 Sobic009G211900 Sobic009G211900 Sobic008G136800--Sobic009G211900 Sobic007G013900 Sobic007G013900 Sobic008G136800--Sobic007G013900 Sobic001G031800 Sobic001G031800 Sobic008G136800--Sobic001G031800 Sobic008G136800--Sobic006G124300 Sobic007G141100 Sobic007G141100 Sobic008G136800--Sobic007G141100 Sobic002G296200 Sobic002G296200 Sobic008G136800--Sobic002G296200 Sobic003G074900 Sobic003G074900 Sobic008G136800--Sobic003G074900 Sobic006G203900--Sobic008G136800 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic001G073600 Sobic001G073600 Sobic006G203900--Sobic001G073600 Sobic006G203900--Sobic004G138300 Sobic006G203900--Sobic006G124300 Sobic003G135600 Sobic003G135600 Sobic006G203900--Sobic003G135600 Sobic006G203900--Sobic009G001900 Sobic006G203900--Sobic007G013900 Sobic001G025600 Sobic001G025600 Sobic003G442400--Sobic001G025600 Sobic006G052400 Sobic006G052400 Sobic003G442400--Sobic006G052400 Sobic003G442400--Sobic004G103700 Sobic008G058300 Sobic008G058300 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G287300 Sobic003G287300 Sobic003G442400--Sobic003G287300 Sobic003G362400 Sobic003G362400 Sobic003G442400--Sobic003G362400 Sobic003G018600 Sobic003G018600 Sobic003G442400--Sobic003G018600 Sobic006G115000 Sobic006G115000 Sobic003G442400--Sobic006G115000 Sobic006G124300--Sobic009G211900 Sobic006G124300--Sobic006G203900 Sobic006G124300--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic006G124300--Sobic004G260200 Sobic006G124300--Sobic005G091700 Sobic006G124300--Sobic001G030300 Sobic006G124300--Sobic003G135600 Sobic006G124300--Sobic003G074900 Sobic001G350600 Sobic001G350600 Sobic006G124300--Sobic001G350600 Sobic001G513500 Sobic001G513500 Sobic005G091700--Sobic001G513500 Sobic010G100000 Sobic010G100000 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic001G018800 Sobic001G018800 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic001G011200 Sobic001G011200 Sobic005G091700--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic005G091700--Sobic005G050500 Sobic004G138300--Sobic006G203900 Sobic004G138300--Sobic008G136800 Sobic003G238500 Sobic003G238500 Sobic004G138300--Sobic003G238500 Sobic004G138300--Sobic009G001900 Sobic004G262300 Sobic004G262300 Sobic004G138300--Sobic004G262300 Sobic004G138300--Sobic009G211900 Sobic004G138300--Sobic003G074900 Sobic003G322300 Sobic003G322300 Sobic004G138300--Sobic003G322300 Sobic004G138300--Sobic006G124300 Sobic009G112900 Sobic009G112900 Sobic008G175100--Sobic009G112900 Sobic001G518500 Sobic001G518500 Sobic008G175100--Sobic001G518500 Sobic003G196600 Sobic003G196600 Sobic008G175100--Sobic003G196600 Sobic008G102600 Sobic008G102600 Sobic008G175100--Sobic008G102600 Sobic007G019100 Sobic007G019100 Sobic008G175100--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic008G175100--Sobic001G342200 Sobic008G175100--Sobic006G124300 Sobic004G286100 Sobic004G286100 Sobic008G175100--Sobic004G286100 Sobic001G112400 Sobic001G112400 Sobic008G175100--Sobic001G112400 Sobic002G135200 Sobic002G135200 Sobic001G030300--Sobic002G135200 Sobic001G030300--Sobic009G179100 Sobic006G261900 Sobic006G261900 Sobic001G030300--Sobic006G261900 Sobic001G030300--Sobic001G513500 Sobic010G023900 Sobic010G023900 Sobic001G030300--Sobic010G023900 Sobic001G030300--Sobic009G101700 Sobic009G119900 Sobic009G119900 Sobic001G030300--Sobic009G119900 Sobic002G356400 Sobic002G356400 Sobic001G030300--Sobic002G356400 Sobic001G030300--Sobic002G296200 Sobic004G103700--Sobic001G025600 Sobic001G172000 Sobic001G172000 Sobic004G103700--Sobic001G172000 Sobic006G010600 Sobic006G010600 Sobic004G103700--Sobic006G010600 Sobic004G103700--Sobic002G135200 Sobic004G103700--Sobic001G018800 Sobic004G103700--Sobic003G129800 Sobic007G134000 Sobic007G134000 Sobic004G103700--Sobic007G134000 Sobic002G222900 Sobic002G222900 Sobic004G103700--Sobic002G222900 Sobic010G150575 Sobic010G150575 Sobic004G103700--Sobic010G150575
Octagon: transcription factors


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