Gene annotation
Transcriptome id Sobic.003G128200.1
Synonym Sb03g010850
Functional annotation expressed protein
UniProt C5XH64
Pfam PF09495
Panther DB PTHR36769 PTHR36769:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52040 : -
RAP-DB (Rice) LOC_Os01g16550.1 : expressed protein
MaizeGDB (Corn) Zm00025a035235
Brachypodium KQK03860
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G128200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
2 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
3 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
4 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
5 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
6 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
8 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
9 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
10 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
11 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
12 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
13 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
14 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
15 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
16 Sobic.005G110800 - -
17 Sobic.004G198500 Brix domain containing protein, putative, expressed K14820: BRX1, ribosome biogenesis protein BRX1
18 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
19 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
20 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12


Gene co-expression network
sample Sobic003G128200 Sobic003G128200 Sobic001G018800 Sobic001G018800 Sobic003G128200--Sobic001G018800 Sobic010G023900 Sobic010G023900 Sobic003G128200--Sobic010G023900 Sobic006G149200 Sobic006G149200 Sobic003G128200--Sobic006G149200 Sobic006G115000 Sobic006G115000 Sobic003G128200--Sobic006G115000 Sobic009G227400 Sobic009G227400 Sobic003G128200--Sobic009G227400 Sobic002G280200 Sobic002G280200 Sobic003G128200--Sobic002G280200 Sobic010G023800 Sobic010G023800 Sobic003G128200--Sobic010G023800 Sobic001G505500 Sobic001G505500 Sobic003G128200--Sobic001G505500 Sobic002G286900 Sobic002G286900 Sobic003G128200--Sobic002G286900 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic001G018800--Sobic010G023900 Sobic004G342400 Sobic004G342400 Sobic010G023900--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic010G023900--Sobic002G286900 Sobic003G387900 Sobic003G387900 Sobic010G023900--Sobic003G387900 Sobic009G179100 Sobic009G179100 Sobic010G023900--Sobic009G179100 Sobic009G233400 Sobic009G233400 Sobic010G023900--Sobic009G233400 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500 Sobic006G149200--Sobic006G115000 Sobic006G149200--Sobic002G286900 Sobic006G149200--Sobic003G018600 Sobic003G073900 Sobic003G073900 Sobic006G149200--Sobic003G073900 Sobic004G217450 Sobic004G217450 Sobic006G149200--Sobic004G217450 Sobic003G150000 Sobic003G150000 Sobic006G149200--Sobic003G150000 Sobic006G231700 Sobic006G231700 Sobic006G149200--Sobic006G231700 Sobic005G110800 Sobic005G110800 Sobic006G149200--Sobic005G110800 Sobic006G159600 Sobic006G159600 Sobic006G149200--Sobic006G159600 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic003G249700 Sobic003G249700 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G115000--Sobic006G137100 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic009G227400--Sobic001G334300 Sobic009G144300 Sobic009G144300 Sobic009G227400--Sobic009G144300 Sobic009G227400--Sobic006G137100 Sobic009G227400--Sobic002G286900 Sobic009G076400 Sobic009G076400 Sobic009G227400--Sobic009G076400 Sobic002G049300 Sobic002G049300 Sobic009G227400--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G227400--Sobic002G255100 Sobic009G227400--Sobic010G023900 Sobic009G227400--Sobic003G387900 Sobic006G062800 Sobic006G062800 Sobic002G280200--Sobic006G062800 Sobic010G213400 Sobic010G213400 Sobic002G280200--Sobic010G213400 Sobic002G116200 Sobic002G116200 Sobic002G280200--Sobic002G116200 Sobic005G111100 Sobic005G111100 Sobic002G280200--Sobic005G111100 Sobic003G362400 Sobic003G362400 Sobic002G280200--Sobic003G362400 Sobic010G150575 Sobic010G150575 Sobic002G280200--Sobic010G150575 Sobic002G280200--Sobic003G018600 Sobic001G066700 Sobic001G066700 Sobic002G280200--Sobic001G066700 Sobic006G131400 Sobic006G131400 Sobic002G280200--Sobic006G131400 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic010G023800--Sobic001G505500 Sobic004G138800 Sobic004G138800 Sobic001G505500--Sobic004G138800 Sobic001G418900 Sobic001G418900 Sobic001G505500--Sobic001G418900 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G505500--Sobic001G334300 Sobic001G505500--Sobic001G018800 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500 Sobic002G286900--Sobic006G137100 Sobic008G108601 Sobic008G108601 Sobic002G286900--Sobic008G108601 Sobic004G008400 Sobic004G008400 Sobic002G286900--Sobic004G008400 Sobic009G050300 Sobic009G050300 Sobic002G286900--Sobic009G050300 Sobic002G286900--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic002G286900--Sobic005G110800 Sobic007G178600 Sobic007G178600 Sobic002G286900--Sobic007G178600
Octagon: transcription factors


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