Gene annotation
Transcriptome id Sobic.006G226500.1
Synonym EDA27, Sb06g029530, NOP10
Functional annotation h/ACA ribonucleoprotein complex subunit 3, putative, expressed
UniProt C5YGL6
Pfam PF04135
Panther DB PTHR13305 PTHR13305:SF0
NCBI CDD KOG3503; H/ACA snoRNP complex, subunit NOP10
KEGG Orthology K11130; NOP10, H/ACA ribonucleoprotein complex subunit 3
Gene Ontology GO:0001522; pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT2G20490 : nucleolar RNA-binding Nop10p family protein
RAP-DB (Rice) LOC_Os02g40514.1 : h/ACA ribonucleoprotein complex subunit 3, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK00365
Barley HORVU6Hr1G057640.1 , HORVU6Hr1G057640.2
Wheat TraesCS6D02G207200 , TraesCS6B02G254000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
2 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
3 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
4 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
5 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
6 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
7 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
8 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
9 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
10 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
11 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
12 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
13 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
14 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
15 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
16 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
17 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
18 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
19 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
20 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e


Gene co-expression network
sample Sobic006G226500 Sobic006G226500 Sobic010G100000 Sobic010G100000 Sobic006G226500--Sobic010G100000 Sobic001G505500 Sobic001G505500 Sobic006G226500--Sobic001G505500 Sobic001G018800 Sobic001G018800 Sobic006G226500--Sobic001G018800 Sobic003G280700 Sobic003G280700 Sobic006G226500--Sobic003G280700 Sobic002G331300 Sobic002G331300 Sobic006G226500--Sobic002G331300 Sobic009G144300 Sobic009G144300 Sobic006G226500--Sobic009G144300 Sobic005G050500 Sobic005G050500 Sobic006G226500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic006G226500--Sobic001G334300 Sobic005G091700 Sobic005G091700 Sobic006G226500--Sobic005G091700 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic010G100000--Sobic003G280700 Sobic001G481700 Sobic001G481700 Sobic010G100000--Sobic001G481700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic004G138800 Sobic004G138800 Sobic001G505500--Sobic004G138800 Sobic001G418900 Sobic001G418900 Sobic001G505500--Sobic001G418900 Sobic007G115100 Sobic007G115100 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G505500--Sobic001G334300 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G505500--Sobic001G513500 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic002G049300 Sobic002G049300 Sobic003G280700--Sobic002G049300 Sobic003G280700--Sobic001G011200 Sobic006G081100 Sobic006G081100 Sobic003G280700--Sobic006G081100 Sobic003G280700--Sobic005G050500 Sobic001G085400 Sobic001G085400 Sobic003G280700--Sobic001G085400 Sobic004G198400 Sobic004G198400 Sobic003G280700--Sobic004G198400 Sobic002G056200 Sobic002G056200 Sobic003G280700--Sobic002G056200 Sobic009G022400 Sobic009G022400 Sobic003G280700--Sobic009G022400 Sobic001G403500 Sobic001G403500 Sobic003G280700--Sobic001G403500 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic002G331300--Sobic009G227400 Sobic002G331300--Sobic010G023900 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic009G144300--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic009G144300--Sobic003G387900 Sobic006G216600 Sobic006G216600 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic005G050500--Sobic002G304900 Sobic010G069400 Sobic010G069400 Sobic005G050500--Sobic010G069400 Sobic005G050500--Sobic009G233400 Sobic005G050500--Sobic002G056200 Sobic001G039400 Sobic001G039400 Sobic005G050500--Sobic001G039400 Sobic005G050500--Sobic003G387900 Sobic005G050500--Sobic001G334300 Sobic005G050500--Sobic009G179100 Sobic007G029400 Sobic007G029400 Sobic005G050500--Sobic007G029400 Sobic001G334300--Sobic009G233400 Sobic001G334300--Sobic002G304900 Sobic001G334300--Sobic003G387900 Sobic001G334300--Sobic009G144300 Sobic001G334300--Sobic001G085400 Sobic001G334300--Sobic009G179100 Sobic001G334300--Sobic009G227400 Sobic001G334300--Sobic005G050500 Sobic001G334300--Sobic002G049300 Sobic005G091700--Sobic001G513500 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic005G091700--Sobic001G018800 Sobic005G091700--Sobic003G129800 Sobic005G091700--Sobic002G331300 Sobic005G091700--Sobic009G179100 Sobic005G091700--Sobic001G011200 Sobic005G091700--Sobic005G050500
Octagon: transcription factors


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