Gene annotation
Transcriptome id Sobic.004G198500.1
Synonym Sb04g024510
Functional annotation Brix domain containing protein, putative, expressed
UniProt C5XWF5
Pfam PF04427
Panther DB PTHR13634
NCBI CDD KOG2971; RNA-binding protein required for biogenesis of the ribosomal 60S subunit
KEGG Orthology K14820; BRX1, ribosome biogenesis protein BRX1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15460 : Ribosomal RNA processing Brix domain protein
RAP-DB (Rice) LOC_Os02g37870.1 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031798 , Zm00025a021348
Brachypodium KQK00110
Barley HORVU2Hr1G105380.3 , HORVU2Hr1G105380.2 , HORVU2Hr1G105380.1 , HORVU2Hr1G105380.6 , HORVU2Hr1G105380.5 , HORVU2Hr1G105380.4 , HORVU6Hr1G052560.4 , HORVU6Hr1G052560.5 , HORVU6Hr1G052560.6 , HORVU6Hr1G052560.7 , HORVU6Hr1G052560.1 , HORVU6Hr1G052560.2 , HORVU6Hr1G052560.3 , HORVU6Hr1G052560.8 , HORVU6Hr1G052560.9
Wheat TraesCS2A02G452200 , TraesCS2D02G452000 , TraesCS6A02G204800 , TraesCS6D02G190000 , TraesCS6B02G225700 , TraesCS2B02G473700
Populus -


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cDNA sequences
Sobic.004G198500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
2 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
3 Sobic.002G374900 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
4 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
6 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
7 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
8 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
9 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
10 Sobic.007G045700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
11 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
12 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
13 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
14 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
15 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
16 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
17 Sobic.001G376600 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
18 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
20 Sobic.002G047600 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e


Gene co-expression network
sample Sobic004G198500 Sobic004G198500 Sobic009G163800 Sobic009G163800 Sobic004G198500--Sobic009G163800 Sobic006G137100 Sobic006G137100 Sobic004G198500--Sobic006G137100 Sobic002G374900 Sobic002G374900 Sobic004G198500--Sobic002G374900 Sobic009G050300 Sobic009G050300 Sobic004G198500--Sobic009G050300 Sobic010G166100 Sobic010G166100 Sobic004G198500--Sobic010G166100 Sobic009G166500 Sobic009G166500 Sobic004G198500--Sobic009G166500 Sobic003G346600 Sobic003G346600 Sobic004G198500--Sobic003G346600 Sobic001G091801 Sobic001G091801 Sobic004G198500--Sobic001G091801 Sobic007G138700 Sobic007G138700 Sobic004G198500--Sobic007G138700 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic006G213000 Sobic006G213000 Sobic006G137100--Sobic006G213000 Sobic003G387900 Sobic003G387900 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic001G403500 Sobic001G403500 Sobic006G137100--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic006G137100--Sobic010G060500 Sobic004G008400 Sobic004G008400 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic001G436200 Sobic001G436200 Sobic002G374900--Sobic001G436200 Sobic002G374900--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic002G374900--Sobic004G198400 Sobic001G016400 Sobic001G016400 Sobic002G374900--Sobic001G016400 Sobic001G011200 Sobic001G011200 Sobic002G374900--Sobic001G011200 Sobic002G374900--Sobic009G050300 Sobic007G019000 Sobic007G019000 Sobic002G374900--Sobic007G019000 Sobic002G374900--Sobic010G166100 Sobic004G104100 Sobic004G104100 Sobic002G374900--Sobic004G104100 Sobic006G116700 Sobic006G116700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic010G166100--Sobic004G104100 Sobic006G221200 Sobic006G221200 Sobic010G166100--Sobic006G221200 Sobic004G103800 Sobic004G103800 Sobic010G166100--Sobic004G103800 Sobic007G178600 Sobic007G178600 Sobic010G166100--Sobic007G178600 Sobic010G166100--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic010G166100--Sobic004G322200 Sobic006G260400 Sobic006G260400 Sobic010G166100--Sobic006G260400 Sobic001G085400 Sobic001G085400 Sobic010G166100--Sobic001G085400 Sobic010G166100--Sobic002G047600 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic003G346600--Sobic007G178600 Sobic003G346600--Sobic006G116700 Sobic003G346600--Sobic006G137100 Sobic004G145801 Sobic004G145801 Sobic001G091801--Sobic004G145801 Sobic001G091801--Sobic004G104100 Sobic007G212600 Sobic007G212600 Sobic001G091801--Sobic007G212600 Sobic001G091801--Sobic009G050300 Sobic001G091801--Sobic009G166500 Sobic001G091801--Sobic009G163800 Sobic005G019700 Sobic005G019700 Sobic001G091801--Sobic005G019700 Sobic003G322400 Sobic003G322400 Sobic001G091801--Sobic003G322400 Sobic002G175100 Sobic002G175100 Sobic001G091801--Sobic002G175100 Sobic007G138700--Sobic009G163800 Sobic007G138700--Sobic001G403500 Sobic010G206200 Sobic010G206200 Sobic007G138700--Sobic010G206200 Sobic007G138700--Sobic009G050300 Sobic007G138700--Sobic006G137100 Sobic007G138700--Sobic003G408100 Sobic007G138700--Sobic007G178600 Sobic007G138700--Sobic009G166500 Sobic002G255300 Sobic002G255300 Sobic007G138700--Sobic002G255300
Octagon: transcription factors


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