Gene annotation
Transcriptome id Sobic.008G175100.1
Synonym Sb08g021960
Functional annotation expressed protein
UniProt C5YSE6
Pfam PF09809
Panther DB PTHR21338
NCBI CDD -
KEGG Orthology K17422; large subunit ribosomal protein L41
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40080 : Mitochondrial ribosomal protein L27
RAP-DB (Rice) LOC_Os02g40490.1 : expressed protein
MaizeGDB (Corn) Zm00025a016371 , Zm00025a004732
Brachypodium KQK00362 , KQK00363
Barley HORVU6Hr1G057580.1 , HORVU6Hr1G057580.2
Wheat TraesCS6D02G207000 , TraesCS6A02G228000
Populus -


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cDNA sequences
Sobic.008G175100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
2 Sobic.001G518500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
3 Sobic.003G196600 expressed protein -
4 Sobic.008G102600 expressed protein -
5 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
6 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
7 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
8 Sobic.004G286100 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
9 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
10 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
11 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -
12 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
13 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
14 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
15 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
16 Sobic.006G251701 - -
17 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
18 Sobic.002G249800 DnaK family protein, putative, expressed K04043: dnaK, molecular chaperone DnaK
19 Sobic.001G022300 expressed protein K17422: large subunit ribosomal protein L41
20 Sobic.001G050400 expressed protein -


Gene co-expression network
sample Sobic008G175100 Sobic008G175100 Sobic009G112900 Sobic009G112900 Sobic008G175100--Sobic009G112900 Sobic001G518500 Sobic001G518500 Sobic008G175100--Sobic001G518500 Sobic003G196600 Sobic003G196600 Sobic008G175100--Sobic003G196600 Sobic008G102600 Sobic008G102600 Sobic008G175100--Sobic008G102600 Sobic007G019100 Sobic007G019100 Sobic008G175100--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic008G175100--Sobic001G342200 Sobic006G124300 Sobic006G124300 Sobic008G175100--Sobic006G124300 Sobic004G286100 Sobic004G286100 Sobic008G175100--Sobic004G286100 Sobic001G112400 Sobic001G112400 Sobic008G175100--Sobic001G112400 Sobic009G112900--Sobic008G102600 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic002G262200 Sobic002G262200 Sobic009G112900--Sobic002G262200 Sobic009G112900--Sobic008G175100 Sobic004G159000 Sobic004G159000 Sobic009G112900--Sobic004G159000 Sobic009G112900--Sobic003G196600 Sobic009G112900--Sobic001G342200 Sobic010G007400 Sobic010G007400 Sobic009G112900--Sobic010G007400 Sobic001G518500--Sobic009G112900 Sobic003G129900 Sobic003G129900 Sobic001G518500--Sobic003G129900 Sobic009G224400 Sobic009G224400 Sobic001G518500--Sobic009G224400 Sobic005G019100 Sobic005G019100 Sobic001G518500--Sobic005G019100 Sobic001G387200 Sobic001G387200 Sobic001G518500--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic001G518500--Sobic004G039400 Sobic001G518500--Sobic002G262200 Sobic002G079700 Sobic002G079700 Sobic001G518500--Sobic002G079700 Sobic007G171500 Sobic007G171500 Sobic001G518500--Sobic007G171500 Sobic003G196600--Sobic004G159000 Sobic004G256700 Sobic004G256700 Sobic003G196600--Sobic004G256700 Sobic003G340700 Sobic003G340700 Sobic003G196600--Sobic003G340700 Sobic003G196600--Sobic009G112900 Sobic004G030000 Sobic004G030000 Sobic003G196600--Sobic004G030000 Sobic003G196600--Sobic004G039400 Sobic003G196600--Sobic001G518500 Sobic003G196600--Sobic005G019100 Sobic003G196600--Sobic008G175100 Sobic001G443200 Sobic001G443200 Sobic008G102600--Sobic001G443200 Sobic008G102600--Sobic009G112900 Sobic003G196200 Sobic003G196200 Sobic008G102600--Sobic003G196200 Sobic004G000100 Sobic004G000100 Sobic008G102600--Sobic004G000100 Sobic004G045300 Sobic004G045300 Sobic008G102600--Sobic004G045300 Sobic008G110500 Sobic008G110500 Sobic008G102600--Sobic008G110500 Sobic001G387800 Sobic001G387800 Sobic008G102600--Sobic001G387800 Sobic008G102600--Sobic001G112400 Sobic008G102600--Sobic004G039400 Sobic007G045600 Sobic007G045600 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G114200 Sobic007G114200 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic007G019100--Sobic001G342200 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic009G211900 Sobic009G211900 Sobic006G124300--Sobic009G211900 Sobic006G203900 Sobic006G203900 Sobic006G124300--Sobic006G203900 Sobic008G136800 Sobic008G136800 Sobic006G124300--Sobic008G136800 Sobic004G260200 Sobic004G260200 Sobic006G124300--Sobic004G260200 Sobic005G091700 Sobic005G091700 Sobic006G124300--Sobic005G091700 Sobic001G030300 Sobic001G030300 Sobic006G124300--Sobic001G030300 Sobic003G135600 Sobic003G135600 Sobic006G124300--Sobic003G135600 Sobic003G074900 Sobic003G074900 Sobic006G124300--Sobic003G074900 Sobic001G350600 Sobic001G350600 Sobic006G124300--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic004G286100--Sobic004G259200 Sobic002G135200 Sobic002G135200 Sobic004G286100--Sobic002G135200 Sobic004G286100--Sobic001G074700 Sobic004G286100--Sobic004G170400 Sobic004G310300 Sobic004G310300 Sobic004G286100--Sobic004G310300 Sobic001G513500 Sobic001G513500 Sobic004G286100--Sobic001G513500 Sobic004G286100--Sobic009G119900 Sobic003G209000 Sobic003G209000 Sobic004G286100--Sobic003G209000 Sobic001G465800 Sobic001G465800 Sobic004G286100--Sobic001G465800 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400
Octagon: transcription factors


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