Gene annotation
Transcriptome id Sobic.003G442400.1
Synonym Sb03g047210, EIF4E, AT.EIF4E1, CUM1, eIF4E1
Functional annotation eukaryotic translation initiation factor, putative, expressed
UniProt C5XJC8
Pfam PF01652
Panther DB PTHR11960
NCBI CDD KOG1670; Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins
KEGG Orthology K03259; translation initiation factor 4E
Gene Ontology GO:0006413; translational initiation GO:0005737cytoplasm GO:0003743translation initiation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G18040 : eukaryotic translation initiation factor 4E
RAP-DB (Rice) LOC_Os01g73880.1 : eukaryotic translation initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a025529 , Zm00025a025842
Brachypodium KQK11728
Barley HORVU3Hr1G113940.2 , HORVU3Hr1G113940.1
Wheat TraesCS3B02G591300 , TraesCS3A02G521500 , TraesCS3D02G527800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
2 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
3 Sobic.004G103700 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
4 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
5 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
6 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
7 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
8 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
9 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
10 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
11 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
12 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
13 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
14 Sobic.001G172000 expressed protein -
15 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
16 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
17 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
19 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
20 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e


Gene co-expression network
sample Sobic003G442400 Sobic003G442400 Sobic001G025600 Sobic001G025600 Sobic003G442400--Sobic001G025600 Sobic006G052400 Sobic006G052400 Sobic003G442400--Sobic006G052400 Sobic004G103700 Sobic004G103700 Sobic003G442400--Sobic004G103700 Sobic008G058300 Sobic008G058300 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G287300 Sobic003G287300 Sobic003G442400--Sobic003G287300 Sobic003G362400 Sobic003G362400 Sobic003G442400--Sobic003G362400 Sobic003G018600 Sobic003G018600 Sobic003G442400--Sobic003G018600 Sobic006G115000 Sobic006G115000 Sobic003G442400--Sobic006G115000 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G481700 Sobic001G481700 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic001G025600--Sobic003G287300 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic009G050200 Sobic009G050200 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic006G052400--Sobic003G442400 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic004G103700--Sobic001G025600 Sobic004G103700--Sobic001G172000 Sobic006G010600 Sobic006G010600 Sobic004G103700--Sobic006G010600 Sobic002G135200 Sobic002G135200 Sobic004G103700--Sobic002G135200 Sobic004G103700--Sobic001G018800 Sobic004G103700--Sobic003G129800 Sobic007G134000 Sobic007G134000 Sobic004G103700--Sobic007G134000 Sobic002G222900 Sobic002G222900 Sobic004G103700--Sobic002G222900 Sobic010G150575 Sobic010G150575 Sobic004G103700--Sobic010G150575 Sobic005G157200 Sobic005G157200 Sobic008G058300--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic008G058300--Sobic003G025200 Sobic001G331900 Sobic001G331900 Sobic008G058300--Sobic001G331900 Sobic008G058300--Sobic006G052400 Sobic004G300900 Sobic004G300900 Sobic008G058300--Sobic004G300900 Sobic010G029400 Sobic010G029400 Sobic008G058300--Sobic010G029400 Sobic004G002350 Sobic004G002350 Sobic008G058300--Sobic004G002350 Sobic002G078400 Sobic002G078400 Sobic008G058300--Sobic002G078400 Sobic001G377800 Sobic001G377800 Sobic008G058300--Sobic001G377800 Sobic003G196800 Sobic003G196800 Sobic005G027300--Sobic003G196800 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic001G342200 Sobic001G342200 Sobic005G027300--Sobic001G342200 Sobic005G027300--Sobic001G025600 Sobic005G027300--Sobic001G481700 Sobic005G027300--Sobic001G513500 Sobic003G287300--Sobic001G025600 Sobic003G160900 Sobic003G160900 Sobic003G287300--Sobic003G160900 Sobic003G287300--Sobic001G481700 Sobic003G287300--Sobic001G096100 Sobic004G342400 Sobic004G342400 Sobic003G287300--Sobic004G342400 Sobic008G073300 Sobic008G073300 Sobic003G287300--Sobic008G073300 Sobic003G287300--Sobic003G442400 Sobic002G371100 Sobic002G371100 Sobic003G287300--Sobic002G371100 Sobic010G023900 Sobic010G023900 Sobic003G287300--Sobic010G023900 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300
Octagon: transcription factors


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