Gene annotation
Transcriptome id Sobic.005G027300.1
Synonym Sb05g002290
Functional annotation ribosomal protein L24, putative, expressed
UniProt C5Y448
Pfam PF00467
Panther DB PTHR12903
NCBI CDD -
KEGG Orthology K02895; RP-L24, MRPL24, large subunit ribosomal protein L24
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G23535 : KOW domain-containing protein
RAP-DB (Rice) LOC_Os11g04370.1 : ribosomal protein L24, putative, expressed
MaizeGDB (Corn) Zm00025a033426
Brachypodium KQJ89569
Barley HORVU4Hr1G026060.1
Wheat TraesCS4A02G186300 , TraesCS4B02G132600 , TraesCS4D02G127400
Populus -


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cDNA sequences
Sobic.005G027300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
2 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.008G098800 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
4 Sobic.009G001900 expressed protein -
5 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
6 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
7 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
8 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
9 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
10 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
11 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
13 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
14 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
15 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
16 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
17 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
18 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
19 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
20 Sobic.008G136800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9


Gene co-expression network
sample Sobic005G027300 Sobic005G027300 Sobic003G196800 Sobic003G196800 Sobic005G027300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic001G342200 Sobic001G342200 Sobic005G027300--Sobic001G342200 Sobic001G025600 Sobic001G025600 Sobic005G027300--Sobic001G025600 Sobic001G481700 Sobic001G481700 Sobic005G027300--Sobic001G481700 Sobic001G513500 Sobic001G513500 Sobic005G027300--Sobic001G513500 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic003G196800--Sobic001G096100 Sobic002G341800 Sobic002G341800 Sobic003G196800--Sobic002G341800 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic001G058900 Sobic001G058900 Sobic008G098800--Sobic001G058900 Sobic002G049300 Sobic002G049300 Sobic008G098800--Sobic002G049300 Sobic009G233400 Sobic009G233400 Sobic008G098800--Sobic009G233400 Sobic010G069400 Sobic010G069400 Sobic008G098800--Sobic010G069400 Sobic006G201500 Sobic006G201500 Sobic008G098800--Sobic006G201500 Sobic002G304900 Sobic002G304900 Sobic008G098800--Sobic002G304900 Sobic001G377800 Sobic001G377800 Sobic008G098800--Sobic001G377800 Sobic005G050500 Sobic005G050500 Sobic008G098800--Sobic005G050500 Sobic003G280700 Sobic003G280700 Sobic008G098800--Sobic003G280700 Sobic002G296200 Sobic002G296200 Sobic009G001900--Sobic002G296200 Sobic008G136800 Sobic008G136800 Sobic009G001900--Sobic008G136800 Sobic009G001900--Sobic004G066800 Sobic006G203900 Sobic006G203900 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic004G164000 Sobic004G164000 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic001G025600--Sobic003G129800 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic001G011200 Sobic001G011200 Sobic001G513500--Sobic001G011200 Sobic002G056200 Sobic002G056200 Sobic001G513500--Sobic002G056200 Sobic001G513500--Sobic003G129800 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic001G513500--Sobic009G179100 Sobic001G513500--Sobic004G310300 Sobic005G091700 Sobic005G091700 Sobic001G513500--Sobic005G091700 Sobic001G513500--Sobic010G100000
Octagon: transcription factors


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