Gene annotation
Transcriptome id Sobic.003G160900.1
Synonym Sb03g014380
Functional annotation 40S ribosomal protein S4, putative, expressed
UniProt C5XJZ0
Pfam PF01479 PF00467 PF08071 PF16121 PF00900
Panther DB PTHR11581 PTHR11581:SF10
NCBI CDD KOG0378; 40S ribosomal protein S4
KEGG Orthology K02987; RP-S4e, small subunit ribosomal protein S4e
Gene Ontology GO:0003723; RNA binding GO:0006412translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G07090 : Ribosomal protein S4 (RPS4A) family protein
RAP-DB (Rice) LOC_Os01g25610.1 : 40S ribosomal protein S4, putative, expressed
MaizeGDB (Corn) Zm00025a038094
Brachypodium KQK07461
Barley HORVU1Hr1G021720.4 , HORVU1Hr1G021720.3 , HORVU1Hr1G021720.2 , HORVU1Hr1G021720.1
Wheat TraesCS1B02G120600 , TraesCS1D02G101600 , TraesCS1A02G092900
Populus -


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cDNA sequences
Sobic.003G160900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
2 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
3 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
4 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
5 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
6 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
7 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
9 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
10 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
11 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
12 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
13 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
14 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
15 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
16 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
17 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
18 Sobic.010G038700 expressed protein -
19 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
20 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e


Gene co-expression network
sample Sobic003G160900 Sobic003G160900 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic001G481700 Sobic001G481700 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic001G085400 Sobic001G085400 Sobic006G216600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic001G025600 Sobic001G025600 Sobic003G287300--Sobic001G025600 Sobic003G287300--Sobic003G160900 Sobic003G287300--Sobic001G481700 Sobic001G096100 Sobic001G096100 Sobic003G287300--Sobic001G096100 Sobic004G342400 Sobic004G342400 Sobic003G287300--Sobic004G342400 Sobic008G073300 Sobic008G073300 Sobic003G287300--Sobic008G073300 Sobic003G442400 Sobic003G442400 Sobic003G287300--Sobic003G442400 Sobic002G371100 Sobic002G371100 Sobic003G287300--Sobic002G371100 Sobic010G023900 Sobic010G023900 Sobic003G287300--Sobic010G023900 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic001G117400--Sobic002G371100 Sobic005G191600 Sobic005G191600 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G117400--Sobic001G404100 Sobic001G117400--Sobic001G481700 Sobic001G057300--Sobic006G216600 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic001G057300--Sobic001G058900 Sobic001G334300 Sobic001G334300 Sobic001G057300--Sobic001G334300 Sobic001G057300--Sobic001G085400 Sobic006G035900 Sobic006G035900 Sobic001G057300--Sobic006G035900 Sobic001G057300--Sobic002G115000 Sobic001G057300--Sobic003G387900 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G227400 Sobic009G227400 Sobic009G144300--Sobic009G227400 Sobic009G233400 Sobic009G233400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic009G144300--Sobic002G255100 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic009G211700--Sobic003G160900 Sobic009G211700--Sobic001G091900 Sobic001G371100 Sobic001G371100 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic003G198300 Sobic003G198300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic001G091900--Sobic004G326600 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G091900--Sobic001G481700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G091900--Sobic001G458700
Octagon: transcription factors


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