Gene annotation
Transcriptome id Sobic.001G091900.1
Synonym Sb01g008280
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X165
Pfam PF00400
Panther DB PTHR16288 PTHR16288:SF0
NCBI CDD KOG3914; WD repeat protein WDR4
KEGG Orthology K15443; TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G03110 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g53530.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016819
Brachypodium KQK13238 , KQK13239
Barley -
Wheat TraesCS5D02G394500 , TraesCS5A02G384800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
2 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
3 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
4 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
5 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
6 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.002G143000 ubiquitin family protein, putative, expressed -
9 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
10 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
11 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
12 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
13 Sobic.002G353000 5-formyltetrahydrofolate cyclo-ligase, putative, expressed K01934: 5-formyltetrahydrofolate cyclo-ligase
14 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
15 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
16 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo
17 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
18 Sobic.004G177100 RNA methyltransferase protein, putative, expressed K15430: TRM11, tRNA (guanine10-N2)-methyltransferase
19 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
20 Sobic.008G132400 expressed protein -


Gene co-expression network
sample Sobic001G091900 Sobic001G091900 Sobic004G326600 Sobic004G326600 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G481700 Sobic001G481700 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic002G341800 Sobic002G341800 Sobic001G091900--Sobic002G341800 Sobic002G143000 Sobic002G143000 Sobic001G091900--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic001G091900--Sobic001G458700 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic004G326600--Sobic002G143000 Sobic004G326600--Sobic001G458700 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic003G160900--Sobic009G211700 Sobic003G160900--Sobic001G091900 Sobic005G003800 Sobic005G003800 Sobic009G190300--Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic009G190300--Sobic008G004000 Sobic009G190300--Sobic001G481700 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic002G394600 Sobic002G394600 Sobic009G190300--Sobic002G394600 Sobic009G190300--Sobic001G091900 Sobic001G404100 Sobic001G404100 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic001G201500 Sobic001G201500 Sobic006G056600--Sobic001G201500 Sobic006G242300 Sobic006G242300 Sobic006G056600--Sobic006G242300 Sobic001G067900 Sobic001G067900 Sobic006G056600--Sobic001G067900 Sobic004G072800 Sobic004G072800 Sobic006G056600--Sobic004G072800 Sobic001G041200 Sobic001G041200 Sobic006G056600--Sobic001G041200 Sobic006G056600--Sobic001G091900 Sobic006G056600--Sobic002G341800 Sobic006G056600--Sobic002G014400 Sobic010G247400 Sobic010G247400 Sobic006G056600--Sobic010G247400 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic009G211700--Sobic003G160900 Sobic009G211700--Sobic001G091900 Sobic001G371100 Sobic001G371100 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic003G198300 Sobic003G198300 Sobic009G211700--Sobic003G198300 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic010G057900 Sobic010G057900 Sobic002G143000--Sobic010G057900 Sobic002G143000--Sobic001G458700 Sobic002G143000--Sobic004G326600 Sobic002G143000--Sobic004G081800 Sobic002G143000--Sobic002G341800 Sobic002G143000--Sobic005G105500 Sobic002G143000--Sobic006G056600 Sobic002G143000--Sobic001G091900 Sobic002G268400 Sobic002G268400 Sobic002G143000--Sobic002G268400 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800
Octagon: transcription factors


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