Gene annotation
Transcriptome id Sobic.002G392800.1
Synonym ATTMPK.2, Sb02g040820, ATTMPK.1, ZEU1
Functional annotation thymidylate kinase, putative, expressed
UniProt C5X3D6
Pfam PF02223
Panther DB PTHR10344
NCBI CDD KOG3327; Thymidylate kinase/adenylate kinase
KEGG Orthology K00943; tmk, dTMP kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59440 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g44630.1 : thymidylate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a015263 , Zm00025a051759 , Zm00025a008800 , Zm00025a027657 , Zm00025a033065 , Zm00025a021004 , Zm00025a036652
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G392800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
3 Sobic.008G004100 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
4 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
5 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
6 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
7 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
8 Sobic.009G117000 expressed protein -
9 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
10 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
11 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
12 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
13 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
14 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
15 Sobic.003G330500 peptidase, T1 family, putative, expressed -
16 Sobic.001G426200 OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
17 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
18 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
19 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
20 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1


Gene co-expression network
sample Sobic002G392800 Sobic002G392800 Sobic001G242800 Sobic001G242800 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic008G004100 Sobic008G004100 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic001G242800--Sobic002G392800 Sobic002G319200 Sobic002G319200 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic001G242800--Sobic008G004100 Sobic001G242800--Sobic001G112700 Sobic009G126500 Sobic009G126500 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic001G112700--Sobic002G392800 Sobic001G112700--Sobic001G242800 Sobic002G353000 Sobic002G353000 Sobic001G112700--Sobic002G353000 Sobic001G112700--Sobic006G002700 Sobic001G096100 Sobic001G096100 Sobic001G112700--Sobic001G096100 Sobic002G309400 Sobic002G309400 Sobic001G112700--Sobic002G309400 Sobic003G290000 Sobic003G290000 Sobic001G112700--Sobic003G290000 Sobic001G112700--Sobic009G126500 Sobic010G060600 Sobic010G060600 Sobic001G112700--Sobic010G060600 Sobic008G004100--Sobic002G392800 Sobic008G004100--Sobic001G242800 Sobic009G213600 Sobic009G213600 Sobic008G004100--Sobic009G213600 Sobic006G230300 Sobic006G230300 Sobic008G004100--Sobic006G230300 Sobic009G102300 Sobic009G102300 Sobic008G004100--Sobic009G102300 Sobic004G161900 Sobic004G161900 Sobic008G004100--Sobic004G161900 Sobic010G218300 Sobic010G218300 Sobic008G004100--Sobic010G218300 Sobic002G280700 Sobic002G280700 Sobic008G004100--Sobic002G280700 Sobic001G476300 Sobic001G476300 Sobic008G004100--Sobic001G476300 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic001G481700 Sobic001G481700 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic003G018600 Sobic003G018600 Sobic010G080500--Sobic003G018600 Sobic001G377800 Sobic001G377800 Sobic010G080500--Sobic001G377800 Sobic009G088100 Sobic009G088100 Sobic010G080500--Sobic009G088100 Sobic001G505500 Sobic001G505500 Sobic010G080500--Sobic001G505500 Sobic002G406500 Sobic002G406500 Sobic010G080500--Sobic002G406500 Sobic010G080500--Sobic008G132700 Sobic001G418900 Sobic001G418900 Sobic010G080500--Sobic001G418900 Sobic007G009100 Sobic007G009100 Sobic010G080500--Sobic007G009100 Sobic010G080500--Sobic002G392800 Sobic003G330500 Sobic003G330500 Sobic006G002700--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic006G002700--Sobic001G007600 Sobic001G110400 Sobic001G110400 Sobic006G002700--Sobic001G110400 Sobic004G224900 Sobic004G224900 Sobic006G002700--Sobic004G224900 Sobic006G002700--Sobic009G238900 Sobic006G002700--Sobic001G096100 Sobic001G502200 Sobic001G502200 Sobic006G002700--Sobic001G502200 Sobic006G002700--Sobic009G088100 Sobic006G002700--Sobic002G392800 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic006G211200 Sobic006G211200 Sobic009G117000--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic009G117000--Sobic007G019000 Sobic002G115000 Sobic002G115000 Sobic009G117000--Sobic002G115000 Sobic009G117000--Sobic001G377800 Sobic004G322200 Sobic004G322200 Sobic009G117000--Sobic004G322200 Sobic006G138100 Sobic006G138100 Sobic009G117000--Sobic006G138100 Sobic008G058300 Sobic008G058300 Sobic009G117000--Sobic008G058300 Sobic009G117000--Sobic006G216600 Sobic006G052400 Sobic006G052400 Sobic009G117000--Sobic006G052400 Sobic008G132700--Sobic006G216600 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic008G132700--Sobic001G085400 Sobic008G132700--Sobic001G418900 Sobic008G132700--Sobic006G138100 Sobic002G049300 Sobic002G049300 Sobic008G132700--Sobic002G049300 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100
Octagon: transcription factors


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