Gene annotation
Transcriptome id Sobic.001G426200.1
Synonym Sb01g040050
Functional annotation OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
UniProt C5WQ45
Pfam PF00412
Panther DB PTHR24206:SF28 PTHR24206
NCBI CDD KOG1700; Regulatory protein MLP and related LIM proteins
KEGG Orthology K09377; cysteine and glycine-rich protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G39900 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os03g15940.1 : OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
MaizeGDB (Corn) Zm00025a001750
Brachypodium KQK22422
Barley HORVU4Hr1G060850.7 , HORVU4Hr1G060850.6 , HORVU4Hr1G060850.4 , HORVU4Hr1G060850.3 , HORVU4Hr1G060850.2
Wheat TraesCS4B02G212600 , TraesCS4D02G213600
Populus -


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cDNA sequences
Sobic.001G426200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
2 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
3 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
4 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
5 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
6 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
7 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
8 Sobic.003G330500 peptidase, T1 family, putative, expressed -
9 Sobic.001G098500 CBS domain containing membrane protein, putative, expressed -
10 Sobic.010G029400 peptidase, T1 family, putative, expressed K02738: 20S proteasome subunit beta 1
11 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
12 Sobic.008G138600 SCARECROW, putative, expressed -
13 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
14 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
15 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
16 Sobic.008G127500 expressed protein -
17 Sobic.004G351500 - -
18 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
19 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
20 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e


Gene co-expression network
sample Sobic001G426200 Sobic001G426200 Sobic006G052400 Sobic006G052400 Sobic001G426200--Sobic006G052400 Sobic001G315500 Sobic001G315500 Sobic001G426200--Sobic001G315500 Sobic010G080500 Sobic010G080500 Sobic001G426200--Sobic010G080500 Sobic006G216600 Sobic006G216600 Sobic001G426200--Sobic006G216600 Sobic009G238900 Sobic009G238900 Sobic001G426200--Sobic009G238900 Sobic002G392800 Sobic002G392800 Sobic001G426200--Sobic002G392800 Sobic009G050200 Sobic009G050200 Sobic001G426200--Sobic009G050200 Sobic003G330500 Sobic003G330500 Sobic001G426200--Sobic003G330500 Sobic001G098500 Sobic001G098500 Sobic001G426200--Sobic001G098500 Sobic008G058300 Sobic008G058300 Sobic006G052400--Sobic008G058300 Sobic001G058900 Sobic001G058900 Sobic006G052400--Sobic001G058900 Sobic006G052400--Sobic009G050200 Sobic001G096100 Sobic001G096100 Sobic006G052400--Sobic001G096100 Sobic006G115000 Sobic006G115000 Sobic006G052400--Sobic006G115000 Sobic001G225700 Sobic001G225700 Sobic006G052400--Sobic001G225700 Sobic003G442400 Sobic003G442400 Sobic006G052400--Sobic003G442400 Sobic003G018600 Sobic003G018600 Sobic006G052400--Sobic003G018600 Sobic009G117000 Sobic009G117000 Sobic006G052400--Sobic009G117000 Sobic001G502200 Sobic001G502200 Sobic001G315500--Sobic001G502200 Sobic003G124800 Sobic003G124800 Sobic001G315500--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G315500--Sobic010G065400 Sobic008G137600 Sobic008G137600 Sobic001G315500--Sobic008G137600 Sobic004G224900 Sobic004G224900 Sobic001G315500--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic001G315500--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic001G315500--Sobic006G252200 Sobic001G315500--Sobic003G330500 Sobic003G362400 Sobic003G362400 Sobic001G315500--Sobic003G362400 Sobic010G080500--Sobic003G018600 Sobic001G377800 Sobic001G377800 Sobic010G080500--Sobic001G377800 Sobic009G088100 Sobic009G088100 Sobic010G080500--Sobic009G088100 Sobic001G505500 Sobic001G505500 Sobic010G080500--Sobic001G505500 Sobic002G406500 Sobic002G406500 Sobic010G080500--Sobic002G406500 Sobic008G132700 Sobic008G132700 Sobic010G080500--Sobic008G132700 Sobic001G418900 Sobic001G418900 Sobic010G080500--Sobic001G418900 Sobic007G009100 Sobic007G009100 Sobic010G080500--Sobic007G009100 Sobic010G080500--Sobic002G392800 Sobic001G085400 Sobic001G085400 Sobic006G216600--Sobic001G085400 Sobic003G387900 Sobic003G387900 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic009G144300 Sobic009G144300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic001G242800 Sobic001G242800 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic008G004100 Sobic008G004100 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic002G392800--Sobic009G238900 Sobic002G392800--Sobic009G117000 Sobic002G392800--Sobic008G132700 Sobic009G050200--Sobic003G018600 Sobic009G050200--Sobic006G052400 Sobic009G050200--Sobic008G058300 Sobic001G331900 Sobic001G331900 Sobic009G050200--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic009G050200--Sobic005G157200 Sobic001G018800 Sobic001G018800 Sobic009G050200--Sobic001G018800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic004G002350 Sobic004G002350 Sobic009G050200--Sobic004G002350 Sobic003G330500--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic001G098500--Sobic001G426200 Sobic009G249000 Sobic009G249000 Sobic001G098500--Sobic009G249000 Sobic007G115100 Sobic007G115100 Sobic001G098500--Sobic007G115100 Sobic006G220700 Sobic006G220700 Sobic001G098500--Sobic006G220700 Sobic010G072300 Sobic010G072300 Sobic001G098500--Sobic010G072300 Sobic004G113700 Sobic004G113700 Sobic001G098500--Sobic004G113700 Sobic004G157800 Sobic004G157800 Sobic001G098500--Sobic004G157800 Sobic001G098500--Sobic010G080500 Sobic006G047000 Sobic006G047000 Sobic001G098500--Sobic006G047000
Octagon: transcription factors


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