Gene annotation
Transcriptome id Sobic.001G098500.1,Sobic.001G098500.2
Synonym Sb01g008800
Functional annotation CBS domain containing membrane protein, putative, expressed
UniProt Q9XHF6 , A0A1B6QIA3 , A0A1B6QI81
Pfam PF00571
Panther DB PTHR11911
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G10860 : Cystathionine beta-synthase (CBS) family protein
RAP-DB (Rice) LOC_Os03g52690.4,LOC_Os03g52690.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a008050
Brachypodium PNT74182 , KQK13331
Barley HORVU4Hr1G011280.2 , HORVU4Hr1G011280.3 , HORVU4Hr1G011280.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G098500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G426200 OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
2 Sobic.009G249000 CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
4 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
5 Sobic.010G072300 sucrose synthase(PubMedID : 26616172)@"Sh1(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659931)@sucrose synthase, putative, expressed K00695: sucrose synthase
6 Sobic.004G113700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K13127: RNF113A, RING finger protein 113A
7 Sobic.004G157800 LITAF-domain-containing protein, putative, expressed K19363: lipopolysaccharide-induced tumor necrosis factor-alpha factor
8 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
9 Sobic.006G047000 CBS domain containing membrane protein, putative, expressed -
10 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
11 Sobic.008G138600 SCARECROW, putative, expressed -
12 Sobic.005G092800 expressed protein -
13 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
14 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
15 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
16 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
17 Sobic.009G054100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.003G381000 transcriptional regulator, putative, expressed -
19 Sobic.010G148400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
20 Sobic.009G094450 - -


Gene co-expression network
sample Sobic001G098500 Sobic001G098500 Sobic001G426200 Sobic001G426200 Sobic001G098500--Sobic001G426200 Sobic009G249000 Sobic009G249000 Sobic001G098500--Sobic009G249000 Sobic007G115100 Sobic007G115100 Sobic001G098500--Sobic007G115100 Sobic006G220700 Sobic006G220700 Sobic001G098500--Sobic006G220700 Sobic010G072300 Sobic010G072300 Sobic001G098500--Sobic010G072300 Sobic004G113700 Sobic004G113700 Sobic001G098500--Sobic004G113700 Sobic004G157800 Sobic004G157800 Sobic001G098500--Sobic004G157800 Sobic010G080500 Sobic010G080500 Sobic001G098500--Sobic010G080500 Sobic006G047000 Sobic006G047000 Sobic001G098500--Sobic006G047000 Sobic006G052400 Sobic006G052400 Sobic001G426200--Sobic006G052400 Sobic001G315500 Sobic001G315500 Sobic001G426200--Sobic001G315500 Sobic001G426200--Sobic010G080500 Sobic006G216600 Sobic006G216600 Sobic001G426200--Sobic006G216600 Sobic009G238900 Sobic009G238900 Sobic001G426200--Sobic009G238900 Sobic002G392800 Sobic002G392800 Sobic001G426200--Sobic002G392800 Sobic009G050200 Sobic009G050200 Sobic001G426200--Sobic009G050200 Sobic003G330500 Sobic003G330500 Sobic001G426200--Sobic003G330500 Sobic001G426200--Sobic001G098500 Sobic005G092800 Sobic005G092800 Sobic009G249000--Sobic005G092800 Sobic009G249000--Sobic004G157800 Sobic004G172700 Sobic004G172700 Sobic009G249000--Sobic004G172700 Sobic004G352900 Sobic004G352900 Sobic009G249000--Sobic004G352900 Sobic010G062800 Sobic010G062800 Sobic009G249000--Sobic010G062800 Sobic004G014000 Sobic004G014000 Sobic009G249000--Sobic004G014000 Sobic001G403700 Sobic001G403700 Sobic009G249000--Sobic001G403700 Sobic002G078400 Sobic002G078400 Sobic009G249000--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic009G249000--Sobic008G132800 Sobic001G418900 Sobic001G418900 Sobic007G115100--Sobic001G418900 Sobic004G269700 Sobic004G269700 Sobic007G115100--Sobic004G269700 Sobic003G155400 Sobic003G155400 Sobic007G115100--Sobic003G155400 Sobic001G505500 Sobic001G505500 Sobic007G115100--Sobic001G505500 Sobic010G153100 Sobic010G153100 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic010G023800 Sobic010G023800 Sobic007G115100--Sobic010G023800 Sobic010G154700 Sobic010G154700 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic006G220700--Sobic010G153100 Sobic001G331900 Sobic001G331900 Sobic006G220700--Sobic001G331900 Sobic003G362400 Sobic003G362400 Sobic006G220700--Sobic003G362400 Sobic006G220700--Sobic008G132800 Sobic004G107600 Sobic004G107600 Sobic006G220700--Sobic004G107600 Sobic005G157200 Sobic005G157200 Sobic006G220700--Sobic005G157200 Sobic006G220700--Sobic002G078400 Sobic001G529000 Sobic001G529000 Sobic006G220700--Sobic001G529000 Sobic002G116200 Sobic002G116200 Sobic006G220700--Sobic002G116200 Sobic004G069200 Sobic004G069200 Sobic010G072300--Sobic004G069200 Sobic008G132700 Sobic008G132700 Sobic010G072300--Sobic008G132700 Sobic001G201100 Sobic001G201100 Sobic010G072300--Sobic001G201100 Sobic002G312900 Sobic002G312900 Sobic010G072300--Sobic002G312900 Sobic007G009100 Sobic007G009100 Sobic010G072300--Sobic007G009100 Sobic009G179900 Sobic009G179900 Sobic010G072300--Sobic009G179900 Sobic010G257100 Sobic010G257100 Sobic010G072300--Sobic010G257100 Sobic010G260100 Sobic010G260100 Sobic010G072300--Sobic010G260100 Sobic010G259900 Sobic010G259900 Sobic010G072300--Sobic010G259900 Sobic004G113700--Sobic003G362400 Sobic004G113700--Sobic002G078400 Sobic004G325200 Sobic004G325200 Sobic004G113700--Sobic004G325200 Sobic010G065400 Sobic010G065400 Sobic004G113700--Sobic010G065400 Sobic010G148400 Sobic010G148400 Sobic004G113700--Sobic010G148400 Sobic009G094450 Sobic009G094450 Sobic004G113700--Sobic009G094450 Sobic004G113700--Sobic005G092800 Sobic004G113700--Sobic010G257100 Sobic001G117400 Sobic001G117400 Sobic004G113700--Sobic001G117400 Sobic001G064800 Sobic001G064800 Sobic004G157800--Sobic001G064800 Sobic004G157800--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic004G157800--Sobic006G182100 Sobic004G157800--Sobic009G249000 Sobic004G157800--Sobic009G094450 Sobic001G526100 Sobic001G526100 Sobic004G157800--Sobic001G526100 Sobic004G157800--Sobic005G092800 Sobic001G445800 Sobic001G445800 Sobic004G157800--Sobic001G445800 Sobic004G157800--Sobic001G403700 Sobic003G018600 Sobic003G018600 Sobic010G080500--Sobic003G018600 Sobic001G377800 Sobic001G377800 Sobic010G080500--Sobic001G377800 Sobic009G088100 Sobic009G088100 Sobic010G080500--Sobic009G088100 Sobic010G080500--Sobic001G505500 Sobic002G406500 Sobic002G406500 Sobic010G080500--Sobic002G406500 Sobic010G080500--Sobic008G132700 Sobic010G080500--Sobic001G418900 Sobic010G080500--Sobic007G009100 Sobic010G080500--Sobic002G392800 Sobic001G234300 Sobic001G234300 Sobic006G047000--Sobic001G234300 Sobic002G421600 Sobic002G421600 Sobic006G047000--Sobic002G421600 Sobic007G177100 Sobic007G177100 Sobic006G047000--Sobic007G177100 Sobic007G126100 Sobic007G126100 Sobic006G047000--Sobic007G126100 Sobic010G030401 Sobic010G030401 Sobic006G047000--Sobic010G030401 Sobic010G250600 Sobic010G250600 Sobic006G047000--Sobic010G250600 Sobic006G159300 Sobic006G159300 Sobic006G047000--Sobic006G159300 Sobic001G321500 Sobic001G321500 Sobic006G047000--Sobic001G321500 Sobic010G194300 Sobic010G194300 Sobic006G047000--Sobic010G194300
Octagon: transcription factors


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