Gene annotation
Transcriptome id Sobic.004G113700.1
Synonym Sb04g009270
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
UniProt C5XZF5
Pfam PF13920 PF00642
Panther DB PTHR12930
NCBI CDD KOG1813; Predicted E3 ubiquitin ligase
KEGG Orthology K13127; RNF113A, RING finger protein 113A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01350 : Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os02g19804.1 : Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034425
Brachypodium KQJ94272
Barley HORVU4Hr1G062570.1
Wheat TraesCS6B02G296000 , TraesCS4A02G082400 , TraesCS4D02G222000
Populus -


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cDNA sequences
Sobic.004G113700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
2 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
3 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
4 Sobic.010G065400 X0001, putative, expressed -
5 Sobic.010G148400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
6 Sobic.009G094450 - -
7 Sobic.005G092800 expressed protein -
8 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
10 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
11 Sobic.008G127500 expressed protein -
12 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
13 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
14 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
15 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
16 Sobic.003G244300 C2 domain containing protein, putative, expressed -
17 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
18 Sobic.001G331900 expressed protein -
19 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
20 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31


Gene co-expression network
sample Sobic004G113700 Sobic004G113700 Sobic003G362400 Sobic003G362400 Sobic004G113700--Sobic003G362400 Sobic002G078400 Sobic002G078400 Sobic004G113700--Sobic002G078400 Sobic004G325200 Sobic004G325200 Sobic004G113700--Sobic004G325200 Sobic010G065400 Sobic010G065400 Sobic004G113700--Sobic010G065400 Sobic010G148400 Sobic010G148400 Sobic004G113700--Sobic010G148400 Sobic009G094450 Sobic009G094450 Sobic004G113700--Sobic009G094450 Sobic005G092800 Sobic005G092800 Sobic004G113700--Sobic005G092800 Sobic010G257100 Sobic010G257100 Sobic004G113700--Sobic010G257100 Sobic001G117400 Sobic001G117400 Sobic004G113700--Sobic001G117400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic010G054200 Sobic010G054200 Sobic004G325200--Sobic010G054200 Sobic008G100000 Sobic008G100000 Sobic004G325200--Sobic008G100000 Sobic003G244300 Sobic003G244300 Sobic004G325200--Sobic003G244300 Sobic006G081100 Sobic006G081100 Sobic004G325200--Sobic006G081100 Sobic001G225700 Sobic001G225700 Sobic004G325200--Sobic001G225700 Sobic006G115000 Sobic006G115000 Sobic004G325200--Sobic006G115000 Sobic003G268200 Sobic003G268200 Sobic004G325200--Sobic003G268200 Sobic003G073900 Sobic003G073900 Sobic004G325200--Sobic003G073900 Sobic001G510800 Sobic001G510800 Sobic004G325200--Sobic001G510800 Sobic010G065400--Sobic002G078400 Sobic008G127500 Sobic008G127500 Sobic010G065400--Sobic008G127500 Sobic010G065400--Sobic008G132800 Sobic001G502200 Sobic001G502200 Sobic010G065400--Sobic001G502200 Sobic001G315500 Sobic001G315500 Sobic010G065400--Sobic001G315500 Sobic004G196300 Sobic004G196300 Sobic010G065400--Sobic004G196300 Sobic010G065400--Sobic003G362400 Sobic010G065400--Sobic005G111100 Sobic010G065400--Sobic009G198500 Sobic010G148400--Sobic004G113700 Sobic010G148400--Sobic003G362400 Sobic010G148400--Sobic010G054200 Sobic010G148400--Sobic004G325200 Sobic001G377800 Sobic001G377800 Sobic010G148400--Sobic001G377800 Sobic010G148400--Sobic005G092800 Sobic010G080500 Sobic010G080500 Sobic010G148400--Sobic010G080500 Sobic010G148400--Sobic009G094450 Sobic010G148400--Sobic003G073900 Sobic005G228000 Sobic005G228000 Sobic009G094450--Sobic005G228000 Sobic010G153100 Sobic010G153100 Sobic009G094450--Sobic010G153100 Sobic009G094450--Sobic005G092800 Sobic001G019900 Sobic001G019900 Sobic009G094450--Sobic001G019900 Sobic004G026400 Sobic004G026400 Sobic009G094450--Sobic004G026400 Sobic009G094450--Sobic001G445800 Sobic001G067601 Sobic001G067601 Sobic009G094450--Sobic001G067601 Sobic010G217900 Sobic010G217900 Sobic009G094450--Sobic010G217900 Sobic003G321700 Sobic003G321700 Sobic009G094450--Sobic003G321700 Sobic005G092800--Sobic001G019900 Sobic005G092800--Sobic003G321700 Sobic005G092800--Sobic004G107600 Sobic005G092800--Sobic001G445800 Sobic005G092800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic005G092800--Sobic003G249800 Sobic005G157200 Sobic005G157200 Sobic005G092800--Sobic005G157200 Sobic005G092800--Sobic003G362400 Sobic005G092800--Sobic009G094450 Sobic010G257100--Sobic001G019900 Sobic001G084900 Sobic001G084900 Sobic010G257100--Sobic001G084900 Sobic010G257100--Sobic003G321700 Sobic010G257100--Sobic003G249800 Sobic010G257100--Sobic005G092800 Sobic010G243200 Sobic010G243200 Sobic010G257100--Sobic010G243200 Sobic010G257100--Sobic004G026400 Sobic010G257100--Sobic010G153100 Sobic003G072300 Sobic003G072300 Sobic010G257100--Sobic003G072300 Sobic003G160900 Sobic003G160900 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic002G371100 Sobic002G371100 Sobic001G117400--Sobic002G371100 Sobic005G191600 Sobic005G191600 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic004G002350 Sobic004G002350 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G404100 Sobic001G404100 Sobic001G117400--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic001G117400--Sobic001G481700
Octagon: transcription factors


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