Gene annotation
Transcriptome id Sobic.004G325200.1
Synonym Sb04g035510
Functional annotation 60S ribosome subunit biogenesis protein NIP7, putative, expressed
UniProt C5XUB8
Pfam PF03657
Panther DB PTHR23415
NCBI CDD KOG3492; Ribosome biogenesis protein NIP7
KEGG Orthology K07565; 60S ribosome subunit biogenesis protein NIP7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G15770 : RNA binding
RAP-DB (Rice) LOC_Os07g47420.1 : 60S ribosome subunit biogenesis protein NIP7, putative, expressed
MaizeGDB (Corn) Zm00025a022416
Brachypodium KQK14715
Barley HORVU2Hr1G019810.1 , HORVU2Hr1G019810.3 , HORVU2Hr1G019810.2
Wheat TraesCS2D02G241600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
2 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
3 Sobic.003G244300 C2 domain containing protein, putative, expressed -
4 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
5 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
6 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
7 Sobic.003G268200 VIP1 protein, putative, expressed -
8 Sobic.003G073900 expressed protein -
9 Sobic.001G510800 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
10 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
11 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
12 Sobic.004G113700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K13127: RNF113A, RING finger protein 113A
13 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
14 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
15 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
16 Sobic.004G198400 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.006G221200 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
18 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
19 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
20 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e


Gene co-expression network
sample Sobic004G325200 Sobic004G325200 Sobic010G054200 Sobic010G054200 Sobic004G325200--Sobic010G054200 Sobic008G100000 Sobic008G100000 Sobic004G325200--Sobic008G100000 Sobic003G244300 Sobic003G244300 Sobic004G325200--Sobic003G244300 Sobic006G081100 Sobic006G081100 Sobic004G325200--Sobic006G081100 Sobic001G225700 Sobic001G225700 Sobic004G325200--Sobic001G225700 Sobic006G115000 Sobic006G115000 Sobic004G325200--Sobic006G115000 Sobic003G268200 Sobic003G268200 Sobic004G325200--Sobic003G268200 Sobic003G073900 Sobic003G073900 Sobic004G325200--Sobic003G073900 Sobic001G510800 Sobic001G510800 Sobic004G325200--Sobic001G510800 Sobic010G054200--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic010G054200--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic003G129800 Sobic003G129800 Sobic010G054200--Sobic003G129800 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic008G098800 Sobic008G098800 Sobic008G100000--Sobic008G098800 Sobic008G100000--Sobic001G510800 Sobic008G100000--Sobic001G058900 Sobic008G094600 Sobic008G094600 Sobic008G100000--Sobic008G094600 Sobic004G002350 Sobic004G002350 Sobic008G100000--Sobic004G002350 Sobic010G005300 Sobic010G005300 Sobic008G100000--Sobic010G005300 Sobic002G286900 Sobic002G286900 Sobic008G100000--Sobic002G286900 Sobic002G304900 Sobic002G304900 Sobic008G100000--Sobic002G304900 Sobic008G108601 Sobic008G108601 Sobic008G100000--Sobic008G108601 Sobic003G244300--Sobic004G325200 Sobic003G244300--Sobic008G094600 Sobic004G247200 Sobic004G247200 Sobic003G244300--Sobic004G247200 Sobic003G244300--Sobic008G100000 Sobic003G244300--Sobic008G098800 Sobic010G230700 Sobic010G230700 Sobic003G244300--Sobic010G230700 Sobic003G244300--Sobic002G372400 Sobic006G201500 Sobic006G201500 Sobic003G244300--Sobic006G201500 Sobic005G019700 Sobic005G019700 Sobic003G244300--Sobic005G019700 Sobic006G081100--Sobic003G249700 Sobic006G081100--Sobic008G108601 Sobic006G081100--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic006G081100--Sobic001G091801 Sobic006G221200 Sobic006G221200 Sobic006G081100--Sobic006G221200 Sobic002G047600 Sobic002G047600 Sobic006G081100--Sobic002G047600 Sobic009G050300 Sobic009G050300 Sobic006G081100--Sobic009G050300 Sobic006G081100--Sobic010G230700 Sobic006G081100--Sobic001G225700 Sobic001G225700--Sobic003G249700 Sobic001G225700--Sobic006G081100 Sobic001G225700--Sobic008G108601 Sobic007G178600 Sobic007G178600 Sobic001G225700--Sobic007G178600 Sobic001G225700--Sobic002G047600 Sobic001G225700--Sobic002G286900 Sobic002G049300 Sobic002G049300 Sobic001G225700--Sobic002G049300 Sobic010G251600 Sobic010G251600 Sobic001G225700--Sobic010G251600 Sobic002G115000 Sobic002G115000 Sobic001G225700--Sobic002G115000 Sobic003G018600 Sobic003G018600 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic002G082600 Sobic002G082600 Sobic003G268200--Sobic002G082600 Sobic003G268200--Sobic004G325200 Sobic002G312400 Sobic002G312400 Sobic003G268200--Sobic002G312400 Sobic003G135700 Sobic003G135700 Sobic003G268200--Sobic003G135700 Sobic004G332900 Sobic004G332900 Sobic003G268200--Sobic004G332900 Sobic001G192600 Sobic001G192600 Sobic003G268200--Sobic001G192600 Sobic001G234300 Sobic001G234300 Sobic003G268200--Sobic001G234300 Sobic009G183300 Sobic009G183300 Sobic003G268200--Sobic009G183300 Sobic004G065500 Sobic004G065500 Sobic003G268200--Sobic004G065500 Sobic003G073900--Sobic006G115000 Sobic003G073900--Sobic003G018600 Sobic003G073900--Sobic010G054200 Sobic003G073900--Sobic002G286900 Sobic005G110800 Sobic005G110800 Sobic003G073900--Sobic005G110800 Sobic003G073900--Sobic003G150000 Sobic001G226500 Sobic001G226500 Sobic003G073900--Sobic001G226500 Sobic003G073900--Sobic003G249700 Sobic003G073900--Sobic001G225700 Sobic001G510800--Sobic010G005300 Sobic002G179300 Sobic002G179300 Sobic001G510800--Sobic002G179300 Sobic001G510800--Sobic001G058900 Sobic001G510800--Sobic008G100000 Sobic001G510800--Sobic008G108601 Sobic001G510800--Sobic001G225700 Sobic002G415500 Sobic002G415500 Sobic001G510800--Sobic002G415500 Sobic006G057200 Sobic006G057200 Sobic001G510800--Sobic006G057200 Sobic009G227400 Sobic009G227400 Sobic001G510800--Sobic009G227400
Octagon: transcription factors


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