Gene annotation
Transcriptome id Sobic.003G268200.1
Synonym Sb03g032070
Functional annotation VIP1 protein, putative, expressed
UniProt C5XHI9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g50310.1 : VIP1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a038897 , Zm00025a027904
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G268200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
2 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
3 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
4 Sobic.003G135700 - -
5 Sobic.004G332900 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
6 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
7 Sobic.001G234300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, RING-type, putative, expressed -
8 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
9 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
10 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
11 Sobic.001G329800 allene oxide cyclase 4, chloroplast precursor, putative, expressed K10525: allene oxide cyclase
12 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
13 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
14 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
15 Sobic.002G070200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL84 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
17 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.003G357300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.002G373001 - -
20 Sobic.003G244300 C2 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G268200 Sobic003G268200 Sobic002G082600 Sobic002G082600 Sobic003G268200--Sobic002G082600 Sobic004G325200 Sobic004G325200 Sobic003G268200--Sobic004G325200 Sobic002G312400 Sobic002G312400 Sobic003G268200--Sobic002G312400 Sobic003G135700 Sobic003G135700 Sobic003G268200--Sobic003G135700 Sobic004G332900 Sobic004G332900 Sobic003G268200--Sobic004G332900 Sobic001G192600 Sobic001G192600 Sobic003G268200--Sobic001G192600 Sobic001G234300 Sobic001G234300 Sobic003G268200--Sobic001G234300 Sobic009G183300 Sobic009G183300 Sobic003G268200--Sobic009G183300 Sobic004G065500 Sobic004G065500 Sobic003G268200--Sobic004G065500 Sobic009G036000 Sobic009G036000 Sobic002G082600--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic002G082600--Sobic009G036100 Sobic009G159400 Sobic009G159400 Sobic002G082600--Sobic009G159400 Sobic001G320900 Sobic001G320900 Sobic002G082600--Sobic001G320900 Sobic002G082600--Sobic004G065500 Sobic003G387000 Sobic003G387000 Sobic002G082600--Sobic003G387000 Sobic001G407800 Sobic001G407800 Sobic002G082600--Sobic001G407800 Sobic003G334600 Sobic003G334600 Sobic002G082600--Sobic003G334600 Sobic010G086200 Sobic010G086200 Sobic002G082600--Sobic010G086200 Sobic010G054200 Sobic010G054200 Sobic004G325200--Sobic010G054200 Sobic008G100000 Sobic008G100000 Sobic004G325200--Sobic008G100000 Sobic003G244300 Sobic003G244300 Sobic004G325200--Sobic003G244300 Sobic006G081100 Sobic006G081100 Sobic004G325200--Sobic006G081100 Sobic001G225700 Sobic001G225700 Sobic004G325200--Sobic001G225700 Sobic006G115000 Sobic006G115000 Sobic004G325200--Sobic006G115000 Sobic004G325200--Sobic003G268200 Sobic003G073900 Sobic003G073900 Sobic004G325200--Sobic003G073900 Sobic001G510800 Sobic001G510800 Sobic004G325200--Sobic001G510800 Sobic001G281400 Sobic001G281400 Sobic002G312400--Sobic001G281400 Sobic001G499300 Sobic001G499300 Sobic002G312400--Sobic001G499300 Sobic004G187900 Sobic004G187900 Sobic002G312400--Sobic004G187900 Sobic002G312400--Sobic004G332900 Sobic002G211900 Sobic002G211900 Sobic002G312400--Sobic002G211900 Sobic006G173900 Sobic006G173900 Sobic002G312400--Sobic006G173900 Sobic002G312400--Sobic002G082600 Sobic009G023200 Sobic009G023200 Sobic002G312400--Sobic009G023200 Sobic004G177700 Sobic004G177700 Sobic002G312400--Sobic004G177700 Sobic010G268400 Sobic010G268400 Sobic003G135700--Sobic010G268400 Sobic003G192100 Sobic003G192100 Sobic003G135700--Sobic003G192100 Sobic007G025500 Sobic007G025500 Sobic003G135700--Sobic007G025500 Sobic010G136000 Sobic010G136000 Sobic003G135700--Sobic010G136000 Sobic003G135700--Sobic002G082600 Sobic001G107400 Sobic001G107400 Sobic003G135700--Sobic001G107400 Sobic002G373001 Sobic002G373001 Sobic003G135700--Sobic002G373001 Sobic008G032100 Sobic008G032100 Sobic003G135700--Sobic008G032100 Sobic003G135700--Sobic002G312400 Sobic004G332900--Sobic002G312400 Sobic004G332900--Sobic001G499300 Sobic001G034700 Sobic001G034700 Sobic004G332900--Sobic001G034700 Sobic003G357300 Sobic003G357300 Sobic004G332900--Sobic003G357300 Sobic001G351000 Sobic001G351000 Sobic004G332900--Sobic001G351000 Sobic010G041600 Sobic010G041600 Sobic004G332900--Sobic010G041600 Sobic010G178200 Sobic010G178200 Sobic004G332900--Sobic010G178200 Sobic001G459200 Sobic001G459200 Sobic004G332900--Sobic001G459200 Sobic003G285800 Sobic003G285800 Sobic004G332900--Sobic003G285800 Sobic002G192000 Sobic002G192000 Sobic001G192600--Sobic002G192000 Sobic001G367600 Sobic001G367600 Sobic001G192600--Sobic001G367600 Sobic001G038900 Sobic001G038900 Sobic001G192600--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic001G192600--Sobic006G158600 Sobic001G423800 Sobic001G423800 Sobic001G192600--Sobic001G423800 Sobic001G055600 Sobic001G055600 Sobic001G192600--Sobic001G055600 Sobic001G481100 Sobic001G481100 Sobic001G192600--Sobic001G481100 Sobic009G221400 Sobic009G221400 Sobic001G192600--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic001G192600--Sobic002G353900 Sobic006G193000 Sobic006G193000 Sobic001G234300--Sobic006G193000 Sobic001G234300--Sobic002G082600 Sobic003G021500 Sobic003G021500 Sobic001G234300--Sobic003G021500 Sobic002G034500 Sobic002G034500 Sobic001G234300--Sobic002G034500 Sobic006G047000 Sobic006G047000 Sobic001G234300--Sobic006G047000 Sobic002G174200 Sobic002G174200 Sobic001G234300--Sobic002G174200 Sobic003G364600 Sobic003G364600 Sobic001G234300--Sobic003G364600 Sobic010G041700 Sobic010G041700 Sobic001G234300--Sobic010G041700 Sobic001G483400 Sobic001G483400 Sobic001G234300--Sobic001G483400 Sobic009G183300--Sobic004G065500 Sobic009G183300--Sobic003G387000 Sobic009G183300--Sobic010G086200 Sobic007G107850 Sobic007G107850 Sobic009G183300--Sobic007G107850 Sobic009G129000 Sobic009G129000 Sobic009G183300--Sobic009G129000 Sobic006G231100 Sobic006G231100 Sobic009G183300--Sobic006G231100 Sobic006G267200 Sobic006G267200 Sobic009G183300--Sobic006G267200 Sobic006G231200 Sobic006G231200 Sobic009G183300--Sobic006G231200 Sobic008G177800 Sobic008G177800 Sobic009G183300--Sobic008G177800 Sobic004G065500--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G065500--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic003G228900 Sobic003G228900 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.