Gene annotation
| Transcriptome id | Sobic.001G234300.1 |
|---|---|
| Synonym | Sb01g020530 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) zinc finger, RING-type, putative, expressed |
| UniProt | C5X0D5 |
| Pfam | PF13920 |
| Panther DB | PTHR15315 PTHR15315:SF36 |
| NCBI CDD | KOG1039; Predicted E3 ubiquitin ligase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G47160 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g30850.2 : zinc finger, RING-type, putative, expressed |
| MaizeGDB (Corn) | Zm00025a006769 |
| Brachypodium | KQJ96900 |
| Barley | HORVU1Hr1G037550.8 , HORVU1Hr1G037550.3 , HORVU1Hr1G037550.1 , HORVU1Hr1G037550.7 , HORVU1Hr1G037550.6 , HORVU1Hr1G037550.4 , HORVU1Hr1G037550.2 , HORVU1Hr1G037550.5 |
| Wheat | TraesCS1A02G141900 , TraesCS1B02G159800 , TraesCS1B02G159800 , TraesCS1D02G141000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G193000 | RING-H2 finger protein ATL2A, putative, expressed | - |
| 2 | Sobic.002G082600 | DUF567 domain containing protein, putative, expressed | - |
| 3 | Sobic.003G021500 | sodium/calcium exchanger protein, putative, expressed | - |
| 4 | Sobic.002G034500 | ERD4 protein, putative, expressed | - |
| 5 | Sobic.006G047000 | CBS domain containing membrane protein, putative, expressed | - |
| 6 | Sobic.002G174200 | WRKY74, expressed | - |
| 7 | Sobic.003G364600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed | - |
| 8 | Sobic.010G041700 | B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed | - |
| 9 | Sobic.001G483400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 10 | Sobic.006G159300 | remorin, putative, expressed | - |
| 11 | Sobic.003G339500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed | - |
| 12 | Sobic.002G373001 | - | - |
| 13 | Sobic.003G334600 | NAC domain transcription factor, putative, expressed | - |
| 14 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 15 | Sobic.009G070400 | expressed protein | - |
| 16 | Sobic.009G036000 | similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed | - |
| 17 | Sobic.005G010200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.004G212900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed | - |
| 19 | Sobic.002G333300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase receptor precursor, putative, expressed | - |
| 20 | Sobic.003G268200 | VIP1 protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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