Gene annotation
Transcriptome id Sobic.006G193000.1
Synonym Sb06g026580, RHA3A
Functional annotation RING-H2 finger protein ATL2A, putative, expressed
UniProt C5YEL2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF187
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G17450 : RING-H2 finger A3A
RAP-DB (Rice) LOC_Os04g49550.1 : RING-H2 finger protein ATL2A, putative, expressed
MaizeGDB (Corn) Zm00025a010054 , Zm00025a056698
Brachypodium KQJ84224 , PNT75296
Barley HORVU2Hr1G104860.1 , HORVU5Hr1G121280.8 , HORVU5Hr1G121280.7 , HORVU5Hr1G087960.1 , HORVU5Hr1G087960.2 , HORVU5Hr1G079940.2 , HORVU5Hr1G079940.1 , HORVU5Hr1G079910.1 , HORVU5Hr1G079930.2 , HORVU5Hr1G079930.1
Wheat TraesCS4A02G338900 , TraesCS5D02G535300 , TraesCS5B02G548200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G234300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, RING-type, putative, expressed -
2 Sobic.002G174200 WRKY74, expressed -
3 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
5 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
8 Sobic.003G339500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
9 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
10 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.001G190100 serine/threonine-protein kinase receptor precursor, putative, expressed -
12 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
13 Sobic.002G282300 expressed protein -
14 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
17 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
18 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
20 Sobic.004G169200 U-box domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G193000 Sobic006G193000 Sobic001G234300 Sobic001G234300 Sobic006G193000--Sobic001G234300 Sobic002G174200 Sobic002G174200 Sobic006G193000--Sobic002G174200 Sobic002G328400 Sobic002G328400 Sobic006G193000--Sobic002G328400 Sobic003G364600 Sobic003G364600 Sobic006G193000--Sobic003G364600 Sobic001G259600 Sobic001G259600 Sobic006G193000--Sobic001G259600 Sobic006G263600 Sobic006G263600 Sobic006G193000--Sobic006G263600 Sobic003G324400 Sobic003G324400 Sobic006G193000--Sobic003G324400 Sobic003G339500 Sobic003G339500 Sobic006G193000--Sobic003G339500 Sobic009G036000 Sobic009G036000 Sobic006G193000--Sobic009G036000 Sobic001G234300--Sobic006G193000 Sobic002G082600 Sobic002G082600 Sobic001G234300--Sobic002G082600 Sobic003G021500 Sobic003G021500 Sobic001G234300--Sobic003G021500 Sobic002G034500 Sobic002G034500 Sobic001G234300--Sobic002G034500 Sobic006G047000 Sobic006G047000 Sobic001G234300--Sobic006G047000 Sobic001G234300--Sobic002G174200 Sobic001G234300--Sobic003G364600 Sobic010G041700 Sobic010G041700 Sobic001G234300--Sobic010G041700 Sobic001G483400 Sobic001G483400 Sobic001G234300--Sobic001G483400 Sobic002G174200--Sobic001G259600 Sobic002G174200--Sobic009G036000 Sobic002G174200--Sobic001G483400 Sobic001G259700 Sobic001G259700 Sobic002G174200--Sobic001G259700 Sobic007G213800 Sobic007G213800 Sobic002G174200--Sobic007G213800 Sobic006G190100 Sobic006G190100 Sobic002G174200--Sobic006G190100 Sobic002G405600 Sobic002G405600 Sobic002G174200--Sobic002G405600 Sobic002G291900 Sobic002G291900 Sobic002G174200--Sobic002G291900 Sobic003G313800 Sobic003G313800 Sobic002G174200--Sobic003G313800 Sobic009G141500 Sobic009G141500 Sobic002G328400--Sobic009G141500 Sobic002G328400--Sobic001G259700 Sobic003G265200 Sobic003G265200 Sobic002G328400--Sobic003G265200 Sobic004G191400 Sobic004G191400 Sobic002G328400--Sobic004G191400 Sobic003G260300 Sobic003G260300 Sobic002G328400--Sobic003G260300 Sobic004G169200 Sobic004G169200 Sobic002G328400--Sobic004G169200 Sobic001G079300 Sobic001G079300 Sobic002G328400--Sobic001G079300 Sobic002G328400--Sobic006G263600 Sobic001G431500 Sobic001G431500 Sobic002G328400--Sobic001G431500 Sobic007G074000 Sobic007G074000 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G369100 Sobic003G369100 Sobic003G364600--Sobic003G369100 Sobic001G308300 Sobic001G308300 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic001G391500 Sobic001G391500 Sobic003G364600--Sobic001G391500 Sobic003G364600--Sobic003G339500 Sobic001G259600--Sobic001G259700 Sobic001G259600--Sobic003G313800 Sobic010G209100 Sobic010G209100 Sobic001G259600--Sobic010G209100 Sobic002G282300 Sobic002G282300 Sobic001G259600--Sobic002G282300 Sobic001G259600--Sobic006G263600 Sobic001G259600--Sobic007G213800 Sobic001G259600--Sobic003G324400 Sobic001G259600--Sobic004G169200 Sobic005G037000 Sobic005G037000 Sobic001G259600--Sobic005G037000 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic009G247900 Sobic009G247900 Sobic006G263600--Sobic009G247900 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic006G263600--Sobic003G324400 Sobic006G263600--Sobic007G213800 Sobic006G263600--Sobic001G079300 Sobic006G263600--Sobic002G282300 Sobic006G165100 Sobic006G165100 Sobic003G324400--Sobic006G165100 Sobic001G040200 Sobic001G040200 Sobic003G324400--Sobic001G040200 Sobic002G140300 Sobic002G140300 Sobic003G324400--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic003G324400--Sobic009G036100 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic003G324400--Sobic002G405600 Sobic003G324400--Sobic003G313800 Sobic003G324400--Sobic002G282300 Sobic003G339500--Sobic003G364600 Sobic003G339500--Sobic001G391500 Sobic001G138600 Sobic001G138600 Sobic003G339500--Sobic001G138600 Sobic003G339500--Sobic007G074000 Sobic003G382800 Sobic003G382800 Sobic003G339500--Sobic003G382800 Sobic003G339500--Sobic004G141200 Sobic003G339500--Sobic003G260300 Sobic003G339500--Sobic003G369100 Sobic003G339500--Sobic007G036900 Sobic001G320900 Sobic001G320900 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G036000--Sobic009G247900 Sobic009G036000--Sobic001G383700 Sobic009G036000--Sobic003G364600 Sobic009G036000--Sobic007G074000 Sobic009G036000--Sobic001G308300 Sobic009G036000--Sobic001G391500 Sobic009G036000--Sobic004G169200
Octagon: transcription factors


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