Gene annotation
Transcriptome id Sobic.010G148400.1
Synonym AGL62, Sb10g019790
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
OsMADS75 - MADS-box family gene with M-alpha type-box, expressed
UniProt C5Z3H0
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF232
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G60440 : AGAMOUS-like 62
RAP-DB (Rice) LOC_Os06g30810.1 : OsMADS75 - MADS-box family gene with M-alpha type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K13127: RNF113A, RING finger protein 113A
2 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
3 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
4 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
5 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
6 Sobic.005G092800 expressed protein -
7 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
8 Sobic.009G094450 - -
9 Sobic.003G073900 expressed protein -
10 Sobic.004G026400 expressed protein -
11 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
12 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
13 Sobic.003G244300 C2 domain containing protein, putative, expressed -
14 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
15 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
16 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
17 Sobic.008G127500 expressed protein -
18 Sobic.008G138600 SCARECROW, putative, expressed -
19 Sobic.001G331900 expressed protein -
20 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e


Gene co-expression network
sample Sobic010G148400 Sobic010G148400 Sobic004G113700 Sobic004G113700 Sobic010G148400--Sobic004G113700 Sobic003G362400 Sobic003G362400 Sobic010G148400--Sobic003G362400 Sobic010G054200 Sobic010G054200 Sobic010G148400--Sobic010G054200 Sobic004G325200 Sobic004G325200 Sobic010G148400--Sobic004G325200 Sobic001G377800 Sobic001G377800 Sobic010G148400--Sobic001G377800 Sobic005G092800 Sobic005G092800 Sobic010G148400--Sobic005G092800 Sobic010G080500 Sobic010G080500 Sobic010G148400--Sobic010G080500 Sobic009G094450 Sobic009G094450 Sobic010G148400--Sobic009G094450 Sobic003G073900 Sobic003G073900 Sobic010G148400--Sobic003G073900 Sobic004G113700--Sobic003G362400 Sobic002G078400 Sobic002G078400 Sobic004G113700--Sobic002G078400 Sobic004G113700--Sobic004G325200 Sobic010G065400 Sobic010G065400 Sobic004G113700--Sobic010G065400 Sobic004G113700--Sobic010G148400 Sobic004G113700--Sobic009G094450 Sobic004G113700--Sobic005G092800 Sobic010G257100 Sobic010G257100 Sobic004G113700--Sobic010G257100 Sobic001G117400 Sobic001G117400 Sobic004G113700--Sobic001G117400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic006G081100 Sobic006G081100 Sobic010G054200--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic010G054200--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic003G129800 Sobic003G129800 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic004G325200--Sobic010G054200 Sobic008G100000 Sobic008G100000 Sobic004G325200--Sobic008G100000 Sobic003G244300 Sobic003G244300 Sobic004G325200--Sobic003G244300 Sobic004G325200--Sobic006G081100 Sobic004G325200--Sobic001G225700 Sobic006G115000 Sobic006G115000 Sobic004G325200--Sobic006G115000 Sobic003G268200 Sobic003G268200 Sobic004G325200--Sobic003G268200 Sobic004G325200--Sobic003G073900 Sobic001G510800 Sobic001G510800 Sobic004G325200--Sobic001G510800 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic001G019900 Sobic001G019900 Sobic005G092800--Sobic001G019900 Sobic003G321700 Sobic003G321700 Sobic005G092800--Sobic003G321700 Sobic005G092800--Sobic004G107600 Sobic001G445800 Sobic001G445800 Sobic005G092800--Sobic001G445800 Sobic005G092800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic005G092800--Sobic003G249800 Sobic005G157200 Sobic005G157200 Sobic005G092800--Sobic005G157200 Sobic005G092800--Sobic003G362400 Sobic005G092800--Sobic009G094450 Sobic003G018600 Sobic003G018600 Sobic010G080500--Sobic003G018600 Sobic010G080500--Sobic001G377800 Sobic009G088100 Sobic009G088100 Sobic010G080500--Sobic009G088100 Sobic001G505500 Sobic001G505500 Sobic010G080500--Sobic001G505500 Sobic010G080500--Sobic002G406500 Sobic008G132700 Sobic008G132700 Sobic010G080500--Sobic008G132700 Sobic001G418900 Sobic001G418900 Sobic010G080500--Sobic001G418900 Sobic007G009100 Sobic007G009100 Sobic010G080500--Sobic007G009100 Sobic002G392800 Sobic002G392800 Sobic010G080500--Sobic002G392800 Sobic005G228000 Sobic005G228000 Sobic009G094450--Sobic005G228000 Sobic010G153100 Sobic010G153100 Sobic009G094450--Sobic010G153100 Sobic009G094450--Sobic005G092800 Sobic009G094450--Sobic001G019900 Sobic004G026400 Sobic004G026400 Sobic009G094450--Sobic004G026400 Sobic009G094450--Sobic001G445800 Sobic001G067601 Sobic001G067601 Sobic009G094450--Sobic001G067601 Sobic010G217900 Sobic010G217900 Sobic009G094450--Sobic010G217900 Sobic009G094450--Sobic003G321700 Sobic003G073900--Sobic006G115000 Sobic003G073900--Sobic003G018600 Sobic003G073900--Sobic010G054200 Sobic002G286900 Sobic002G286900 Sobic003G073900--Sobic002G286900 Sobic005G110800 Sobic005G110800 Sobic003G073900--Sobic005G110800 Sobic003G073900--Sobic003G150000 Sobic001G226500 Sobic001G226500 Sobic003G073900--Sobic001G226500 Sobic003G073900--Sobic003G249700 Sobic003G073900--Sobic001G225700
Octagon: transcription factors


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