Gene annotation
Transcriptome id Sobic.004G026400.1
Synonym Sb04g002340
Functional annotation expressed protein
UniProt C5XTR4
Pfam -
Panther DB PTHR35750 PTHR35750:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17960 : -
RAP-DB (Rice) LOC_Os02g03575.1 : expressed protein
MaizeGDB (Corn) Zm00025a034975 , Zm00025a018827
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G026400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G084900 expressed protein -
2 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
3 Sobic.001G432000 LYR motif containing protein, putative, expressed -
4 Sobic.001G445800 expressed protein -
5 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
6 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
7 Sobic.001G225700 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
8 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
9 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
10 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
11 Sobic.005G110800 - -
12 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.002G312900 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
14 Sobic.003G416300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
16 Sobic.009G094450 - -
17 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
18 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
19 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
20 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31


Gene co-expression network
sample Sobic004G026400 Sobic004G026400 Sobic001G084900 Sobic001G084900 Sobic004G026400--Sobic001G084900 Sobic002G187500 Sobic002G187500 Sobic004G026400--Sobic002G187500 Sobic001G432000 Sobic001G432000 Sobic004G026400--Sobic001G432000 Sobic001G445800 Sobic001G445800 Sobic004G026400--Sobic001G445800 Sobic003G150000 Sobic003G150000 Sobic004G026400--Sobic003G150000 Sobic003G285800 Sobic003G285800 Sobic004G026400--Sobic003G285800 Sobic001G225700 Sobic001G225700 Sobic004G026400--Sobic001G225700 Sobic010G009300 Sobic010G009300 Sobic004G026400--Sobic010G009300 Sobic003G072300 Sobic003G072300 Sobic004G026400--Sobic003G072300 Sobic010G106200 Sobic010G106200 Sobic001G084900--Sobic010G106200 Sobic006G147000 Sobic006G147000 Sobic001G084900--Sobic006G147000 Sobic009G180000 Sobic009G180000 Sobic001G084900--Sobic009G180000 Sobic010G153100 Sobic010G153100 Sobic001G084900--Sobic010G153100 Sobic002G190900 Sobic002G190900 Sobic001G084900--Sobic002G190900 Sobic003G155400 Sobic003G155400 Sobic001G084900--Sobic003G155400 Sobic001G084900--Sobic003G072300 Sobic002G081600 Sobic002G081600 Sobic001G084900--Sobic002G081600 Sobic001G084900--Sobic002G187500 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G187500--Sobic002G081600 Sobic001G281400 Sobic001G281400 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic010G251600 Sobic010G251600 Sobic001G432000--Sobic010G251600 Sobic005G168100 Sobic005G168100 Sobic001G432000--Sobic005G168100 Sobic001G304400 Sobic001G304400 Sobic001G432000--Sobic001G304400 Sobic009G232900 Sobic009G232900 Sobic001G432000--Sobic009G232900 Sobic007G019400 Sobic007G019400 Sobic001G432000--Sobic007G019400 Sobic001G432000--Sobic003G150000 Sobic001G054900 Sobic001G054900 Sobic001G432000--Sobic001G054900 Sobic010G206200 Sobic010G206200 Sobic001G432000--Sobic010G206200 Sobic006G156000 Sobic006G156000 Sobic001G432000--Sobic006G156000 Sobic008G129400 Sobic008G129400 Sobic001G445800--Sobic008G129400 Sobic003G321700 Sobic003G321700 Sobic001G445800--Sobic003G321700 Sobic002G078400 Sobic002G078400 Sobic001G445800--Sobic002G078400 Sobic003G249800 Sobic003G249800 Sobic001G445800--Sobic003G249800 Sobic001G445800--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic001G445800--Sobic010G018400 Sobic010G154700 Sobic010G154700 Sobic001G445800--Sobic010G154700 Sobic001G019900 Sobic001G019900 Sobic001G445800--Sobic001G019900 Sobic001G445800--Sobic002G190900 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic003G150000--Sobic001G054900 Sobic009G050300 Sobic009G050300 Sobic003G150000--Sobic009G050300 Sobic005G019700 Sobic005G019700 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic010G178200 Sobic010G178200 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic002G345300 Sobic002G345300 Sobic003G285800--Sobic002G345300 Sobic001G477300 Sobic001G477300 Sobic003G285800--Sobic001G477300 Sobic003G285800--Sobic001G281400 Sobic010G086200 Sobic010G086200 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic001G225700--Sobic003G249700 Sobic006G081100 Sobic006G081100 Sobic001G225700--Sobic006G081100 Sobic008G108601 Sobic008G108601 Sobic001G225700--Sobic008G108601 Sobic007G178600 Sobic007G178600 Sobic001G225700--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic001G225700--Sobic002G047600 Sobic002G286900 Sobic002G286900 Sobic001G225700--Sobic002G286900 Sobic002G049300 Sobic002G049300 Sobic001G225700--Sobic002G049300 Sobic001G225700--Sobic010G251600 Sobic002G115000 Sobic002G115000 Sobic001G225700--Sobic002G115000 Sobic010G009300--Sobic001G177800 Sobic007G184600 Sobic007G184600 Sobic010G009300--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic010G009300--Sobic009G139400 Sobic010G009300--Sobic002G187500 Sobic010G009300--Sobic002G190900 Sobic001G252300 Sobic001G252300 Sobic010G009300--Sobic001G252300 Sobic009G077800 Sobic009G077800 Sobic010G009300--Sobic009G077800 Sobic006G099900 Sobic006G099900 Sobic010G009300--Sobic006G099900 Sobic004G107700 Sobic004G107700 Sobic010G009300--Sobic004G107700 Sobic003G072300--Sobic002G081600 Sobic004G205100 Sobic004G205100 Sobic003G072300--Sobic004G205100 Sobic003G072300--Sobic002G187500 Sobic003G209000 Sobic003G209000 Sobic003G072300--Sobic003G209000 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic003G072300--Sobic010G204500 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500
Octagon: transcription factors


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