Gene annotation
Transcriptome id Sobic.010G210000.1
Synonym RUB1, NEDD8, ATRUB1, Sb10g025670
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5Z6U2
Pfam PF11976 PF00240
Panther DB PTHR10666
NCBI CDD KOG0005; Ubiquitin-like protein
KEGG Orthology K12158; ubiquitin-like protein Nedd8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G31340 : related to ubiquitin 1
RAP-DB (Rice) LOC_Os06g44080.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a042947 , Zm00025a042035 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a037444 , Zm00025a013490
Brachypodium PNT60865 , KQJ91591 , KQJ93465 , KQK17173 , KQK06725 , PNT77709 , PNT77708 , KQJ90267 , KQK07353 , KQK16840 , KQJ93464 , KQJ93343 , KQK16153 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU6Hr1G029050.4 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU6Hr1G029050.10 , HORVU7Hr1G113500.2 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU3Hr1G014180.1 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.5 , HORVU6Hr1G026260.8 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.3 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU1Hr1G087690.10 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.6 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.22 , HORVU7Hr1G109650.1 , HORVU7Hr1G109650.2 , HORVU2Hr1G048820.1 , HORVU1Hr1G082070.1 , HORVU5Hr1G065170.2 , HORVU5Hr1G065170.3 , HORVU5Hr1G065170.1 , HORVU2Hr1G048830.1 , HORVU7Hr1G029150.2 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.16 , HORVU7Hr1G029150.1
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS5B02G222800 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS7B02G390900 , TraesCS4B02G233100 , TraesCS6A02G148100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCSU02G018500 , TraesCS5D02G231400 , TraesCS4B02G233100 , TraesCS4A02G086400 , TraesCS7D02G474200 , TraesCS7B02G354000 , TraesCS1B02G241200 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS7A02G453600 , TraesCS6D02G137400 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS1A02G227100 , TraesCS6B02G140600 , TraesCS4A02G086300 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS6B02G176400 , TraesCS7A02G487500 , TraesCS1D02G228700
Populus PNT59589 , PNT11513 , PNT28506 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.010G210000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
2 Sobic.002G376500 OsCML8 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
4 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
5 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
6 Sobic.009G050200 expressed protein K15141: mediator of RNA polymerase II transcription subunit 28
7 Sobic.003G073900 expressed protein -
8 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
9 Sobic.004G062400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
10 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
11 Sobic.001G331900 expressed protein -
12 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
13 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
14 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
15 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
16 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
17 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
18 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
19 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
20 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1


Gene co-expression network
sample Sobic010G210000 Sobic010G210000 Sobic003G018600 Sobic003G018600 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic009G012700 Sobic009G012700 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic001G018800 Sobic001G018800 Sobic010G210000--Sobic001G018800 Sobic004G062400 Sobic004G062400 Sobic010G210000--Sobic004G062400 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700 Sobic002G376500--Sobic003G362400 Sobic010G042800 Sobic010G042800 Sobic002G376500--Sobic010G042800 Sobic001G529000 Sobic001G529000 Sobic002G376500--Sobic001G529000 Sobic002G376500--Sobic010G210000 Sobic001G309500 Sobic001G309500 Sobic002G376500--Sobic001G309500 Sobic006G141500 Sobic006G141500 Sobic002G376500--Sobic006G141500 Sobic002G218000 Sobic002G218000 Sobic002G376500--Sobic002G218000 Sobic002G159500 Sobic002G159500 Sobic002G376500--Sobic002G159500 Sobic010G153100 Sobic010G153100 Sobic002G376500--Sobic010G153100 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic002G078400 Sobic002G078400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic009G012700--Sobic006G115000 Sobic002G045100 Sobic002G045100 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic009G012700--Sobic010G210000 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic004G002350 Sobic004G002350 Sobic009G012700--Sobic004G002350 Sobic009G050200--Sobic003G018600 Sobic006G052400 Sobic006G052400 Sobic009G050200--Sobic006G052400 Sobic008G058300 Sobic008G058300 Sobic009G050200--Sobic008G058300 Sobic009G050200--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic009G050200--Sobic005G157200 Sobic009G050200--Sobic001G018800 Sobic009G050200--Sobic001G377800 Sobic001G340500 Sobic001G340500 Sobic009G050200--Sobic001G340500 Sobic009G050200--Sobic004G002350 Sobic003G073900--Sobic006G115000 Sobic003G073900--Sobic003G018600 Sobic010G054200 Sobic010G054200 Sobic003G073900--Sobic010G054200 Sobic003G073900--Sobic002G286900 Sobic003G073900--Sobic005G110800 Sobic003G150000 Sobic003G150000 Sobic003G073900--Sobic003G150000 Sobic001G226500 Sobic001G226500 Sobic003G073900--Sobic001G226500 Sobic003G073900--Sobic003G249700 Sobic001G225700 Sobic001G225700 Sobic003G073900--Sobic001G225700 Sobic001G018800--Sobic001G340500 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic001G018800--Sobic003G018600 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic001G018800--Sobic010G023900 Sobic010G213200 Sobic010G213200 Sobic004G062400--Sobic010G213200 Sobic004G062400--Sobic001G018800 Sobic004G062400--Sobic010G210000 Sobic010G100000 Sobic010G100000 Sobic004G062400--Sobic010G100000 Sobic004G062400--Sobic002G331300 Sobic001G481700 Sobic001G481700 Sobic004G062400--Sobic001G481700 Sobic002G419100 Sobic002G419100 Sobic004G062400--Sobic002G419100 Sobic008G073300 Sobic008G073300 Sobic004G062400--Sobic008G073300 Sobic004G062400--Sobic003G018600
Octagon: transcription factors


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