Gene annotation
Transcriptome id Sobic.004G062400.1
Synonym RUXF, Sb04g005200
Functional annotation LSM domain containing protein, expressed
UniProt C5XW93
Pfam PF01423
Panther DB PTHR11021
NCBI CDD KOG3482; Small nuclear ribonucleoprotein (snRNP) SMF
KEGG Orthology K11098; SNRPF, small nuclear ribonucleoprotein F
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30220 : small nuclear ribonucleoprotein F
RAP-DB (Rice) LOC_Os11g43620.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019175 , Zm00025a034754
Brachypodium KQK16902
Barley -
Wheat TraesCS7A02G496000 , TraesCS7B02G401200 , TraesCS6B02G180100 , TraesCS6D02G141900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G213200 WD domain, G-beta repeat domain containing protein, expressed K12857: SNRNP40, Prp8 binding protein
2 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
3 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
4 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
5 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
6 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
7 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
8 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
9 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
10 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
14 Sobic.001G331900 expressed protein -
15 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
16 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
17 Sobic.001G172000 expressed protein -
18 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
19 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
20 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3


Gene co-expression network
sample Sobic004G062400 Sobic004G062400 Sobic010G213200 Sobic010G213200 Sobic004G062400--Sobic010G213200 Sobic001G018800 Sobic001G018800 Sobic004G062400--Sobic001G018800 Sobic010G210000 Sobic010G210000 Sobic004G062400--Sobic010G210000 Sobic010G100000 Sobic010G100000 Sobic004G062400--Sobic010G100000 Sobic002G331300 Sobic002G331300 Sobic004G062400--Sobic002G331300 Sobic001G481700 Sobic001G481700 Sobic004G062400--Sobic001G481700 Sobic002G419100 Sobic002G419100 Sobic004G062400--Sobic002G419100 Sobic008G073300 Sobic008G073300 Sobic004G062400--Sobic008G073300 Sobic003G018600 Sobic003G018600 Sobic004G062400--Sobic003G018600 Sobic010G213200--Sobic004G062400 Sobic010G213200--Sobic001G481700 Sobic010G213200--Sobic010G100000 Sobic007G152400 Sobic007G152400 Sobic010G213200--Sobic007G152400 Sobic005G050500 Sobic005G050500 Sobic010G213200--Sobic005G050500 Sobic002G428200 Sobic002G428200 Sobic010G213200--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic010G213200--Sobic002G257400 Sobic001G517600 Sobic001G517600 Sobic010G213200--Sobic001G517600 Sobic004G224900 Sobic004G224900 Sobic010G213200--Sobic004G224900 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic010G210000--Sobic003G018600 Sobic002G376500 Sobic002G376500 Sobic010G210000--Sobic002G376500 Sobic006G115000 Sobic006G115000 Sobic010G210000--Sobic006G115000 Sobic003G362400 Sobic003G362400 Sobic010G210000--Sobic003G362400 Sobic009G012700 Sobic009G012700 Sobic010G210000--Sobic009G012700 Sobic009G050200 Sobic009G050200 Sobic010G210000--Sobic009G050200 Sobic003G073900 Sobic003G073900 Sobic010G210000--Sobic003G073900 Sobic010G210000--Sobic001G018800 Sobic010G210000--Sobic004G062400 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic002G331300--Sobic006G115000 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic002G331300--Sobic009G227400 Sobic002G331300--Sobic010G023900 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic009G213500 Sobic009G213500 Sobic002G419100--Sobic009G213500 Sobic010G205300 Sobic010G205300 Sobic002G419100--Sobic010G205300 Sobic003G186700 Sobic003G186700 Sobic002G419100--Sobic003G186700 Sobic002G084500 Sobic002G084500 Sobic002G419100--Sobic002G084500 Sobic002G419100--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic006G252200 Sobic006G252200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic007G045600 Sobic007G045600 Sobic008G073300--Sobic007G045600 Sobic002G371100 Sobic002G371100 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic003G018600--Sobic006G115000 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700
Octagon: transcription factors


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