Gene annotation
Transcriptome id Sobic.006G002700.1
Synonym Sb06g000440
Functional annotation OsRhmbd10 - Putative Rhomboid homologue, expressed
UniProt C5YB94
Pfam PF08551
Panther DB PTHR13377 PTHR13377:SF5
NCBI CDD KOG2890; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006890retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT3G07950 : rhomboid protein-related
RAP-DB (Rice) LOC_Os04g01300.1 : OsRhmbd10 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a012188 , Zm00025a055512
Brachypodium -
Barley -
Wheat TraesCS2B02G053000 , TraesCS2D02G038700
Populus -


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cDNA sequences
Sobic.006G002700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330500 peptidase, T1 family, putative, expressed -
2 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
3 Sobic.001G110400 - -
4 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
5 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
6 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
7 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
8 Sobic.009G088100 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
10 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
11 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
12 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
13 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
14 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
15 Sobic.004G351500 - -
16 Sobic.001G364500 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
17 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
19 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
20 Sobic.005G105500 expressed protein -


Gene co-expression network
sample Sobic006G002700 Sobic006G002700 Sobic003G330500 Sobic003G330500 Sobic006G002700--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic006G002700--Sobic001G007600 Sobic001G110400 Sobic001G110400 Sobic006G002700--Sobic001G110400 Sobic004G224900 Sobic004G224900 Sobic006G002700--Sobic004G224900 Sobic009G238900 Sobic009G238900 Sobic006G002700--Sobic009G238900 Sobic001G096100 Sobic001G096100 Sobic006G002700--Sobic001G096100 Sobic001G502200 Sobic001G502200 Sobic006G002700--Sobic001G502200 Sobic009G088100 Sobic009G088100 Sobic006G002700--Sobic009G088100 Sobic002G392800 Sobic002G392800 Sobic006G002700--Sobic002G392800 Sobic003G330500--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic006G252200 Sobic006G252200 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic001G007600--Sobic006G252200 Sobic009G182300 Sobic009G182300 Sobic001G007600--Sobic009G182300 Sobic001G007600--Sobic007G076300 Sobic001G110400--Sobic006G002700 Sobic001G230100 Sobic001G230100 Sobic001G110400--Sobic001G230100 Sobic001G110400--Sobic001G007600 Sobic009G104000 Sobic009G104000 Sobic001G110400--Sobic009G104000 Sobic001G110400--Sobic006G252200 Sobic010G038700 Sobic010G038700 Sobic001G110400--Sobic010G038700 Sobic001G110400--Sobic004G224900 Sobic001G005900 Sobic001G005900 Sobic001G110400--Sobic001G005900 Sobic001G021300 Sobic001G021300 Sobic001G110400--Sobic001G021300 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic001G096100--Sobic010G038700 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200 Sobic007G142500 Sobic007G142500 Sobic009G088100--Sobic007G142500 Sobic007G045600 Sobic007G045600 Sobic009G088100--Sobic007G045600 Sobic009G088100--Sobic003G330500 Sobic009G088100--Sobic004G224900 Sobic009G088100--Sobic001G236300 Sobic003G261400 Sobic003G261400 Sobic009G088100--Sobic003G261400 Sobic009G088100--Sobic001G458700 Sobic009G088100--Sobic003G124800 Sobic009G088100--Sobic007G176200 Sobic001G242800 Sobic001G242800 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic008G004100 Sobic008G004100 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic002G392800--Sobic006G002700 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700
Octagon: transcription factors


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