Gene annotation
Transcriptome id Sobic.002G187300.1,Sobic.002G187300.2
Synonym Sb02g023530
Functional annotation calmodulin-binding protein, putative, expressed
UniProt A0A1W0W4W0
Pfam -
Panther DB PTHR36039 PTHR36039:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40190 : RNA ligase/cyclic nucleotide phosphodiesterase family protein
RAP-DB (Rice) LOC_Os09g20860.1 : calmodulin-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046769 , Zm00025a013832
Brachypodium KQJ90071 , PNT64484 , PNT64485 , PNT64486 , KQJ90070
Barley HORVU5Hr1G059010.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
2 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
3 Sobic.009G088100 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.004G348900 expressed protein -
5 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
6 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
7 Sobic.010G080200 emp24/gp25L/p24 family protein, putative, expressed -
8 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
9 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
10 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
12 Sobic.003G330500 peptidase, T1 family, putative, expressed -
13 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
14 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
15 Sobic.001G110400 - -
16 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
17 Sobic.003G261400 DUF292 domain containing protein, expressed -
18 Sobic.001G444300 expressed protein -
19 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
20 Sobic.003G321300 disease resistance protein RPS2, putative, expressed K13459: disease resistance protein RPS2


Gene co-expression network
sample Sobic002G187300 Sobic002G187300 Sobic003G047100 Sobic003G047100 Sobic002G187300--Sobic003G047100 Sobic006G002700 Sobic006G002700 Sobic002G187300--Sobic006G002700 Sobic009G088100 Sobic009G088100 Sobic002G187300--Sobic009G088100 Sobic004G348900 Sobic004G348900 Sobic002G187300--Sobic004G348900 Sobic001G109300 Sobic001G109300 Sobic002G187300--Sobic001G109300 Sobic006G252200 Sobic006G252200 Sobic002G187300--Sobic006G252200 Sobic010G080200 Sobic010G080200 Sobic002G187300--Sobic010G080200 Sobic004G130900 Sobic004G130900 Sobic002G187300--Sobic004G130900 Sobic004G173600 Sobic004G173600 Sobic002G187300--Sobic004G173600 Sobic003G047100--Sobic002G187300 Sobic010G016400 Sobic010G016400 Sobic003G047100--Sobic010G016400 Sobic009G139800 Sobic009G139800 Sobic003G047100--Sobic009G139800 Sobic003G259700 Sobic003G259700 Sobic003G047100--Sobic003G259700 Sobic003G087000 Sobic003G087000 Sobic003G047100--Sobic003G087000 Sobic003G047100--Sobic001G109300 Sobic003G428200 Sobic003G428200 Sobic003G047100--Sobic003G428200 Sobic002G113800 Sobic002G113800 Sobic003G047100--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic003G047100--Sobic005G139400 Sobic003G330500 Sobic003G330500 Sobic006G002700--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic006G002700--Sobic001G007600 Sobic001G110400 Sobic001G110400 Sobic006G002700--Sobic001G110400 Sobic004G224900 Sobic004G224900 Sobic006G002700--Sobic004G224900 Sobic009G238900 Sobic009G238900 Sobic006G002700--Sobic009G238900 Sobic001G096100 Sobic001G096100 Sobic006G002700--Sobic001G096100 Sobic001G502200 Sobic001G502200 Sobic006G002700--Sobic001G502200 Sobic006G002700--Sobic009G088100 Sobic002G392800 Sobic002G392800 Sobic006G002700--Sobic002G392800 Sobic007G142500 Sobic007G142500 Sobic009G088100--Sobic007G142500 Sobic007G045600 Sobic007G045600 Sobic009G088100--Sobic007G045600 Sobic009G088100--Sobic003G330500 Sobic009G088100--Sobic004G224900 Sobic001G236300 Sobic001G236300 Sobic009G088100--Sobic001G236300 Sobic003G261400 Sobic003G261400 Sobic009G088100--Sobic003G261400 Sobic001G458700 Sobic001G458700 Sobic009G088100--Sobic001G458700 Sobic003G124800 Sobic003G124800 Sobic009G088100--Sobic003G124800 Sobic007G176200 Sobic007G176200 Sobic009G088100--Sobic007G176200 Sobic001G283200 Sobic001G283200 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic001G404100 Sobic001G404100 Sobic004G348900--Sobic001G404100 Sobic001G206900 Sobic001G206900 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic001G444300 Sobic001G444300 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic001G109300--Sobic007G176200 Sobic001G109300--Sobic009G139800 Sobic001G109300--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G109300--Sobic001G010700 Sobic001G109300--Sobic003G428200 Sobic001G109300--Sobic003G330500 Sobic001G281900 Sobic001G281900 Sobic001G109300--Sobic001G281900 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic001G051200 Sobic001G051200 Sobic010G080200--Sobic001G051200 Sobic009G238800 Sobic009G238800 Sobic010G080200--Sobic009G238800 Sobic002G281300 Sobic002G281300 Sobic010G080200--Sobic002G281300 Sobic006G217700 Sobic006G217700 Sobic010G080200--Sobic006G217700 Sobic005G155700 Sobic005G155700 Sobic010G080200--Sobic005G155700 Sobic001G033500 Sobic001G033500 Sobic010G080200--Sobic001G033500 Sobic001G057800 Sobic001G057800 Sobic010G080200--Sobic001G057800 Sobic002G202400 Sobic002G202400 Sobic010G080200--Sobic002G202400 Sobic010G205300 Sobic010G205300 Sobic010G080200--Sobic010G205300 Sobic004G130900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic004G130900--Sobic004G327300 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic004G130900--Sobic009G198500 Sobic010G000900 Sobic010G000900 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic002G114800 Sobic002G114800 Sobic004G173600--Sobic002G114800 Sobic010G193900 Sobic010G193900 Sobic004G173600--Sobic010G193900 Sobic001G049200 Sobic001G049200 Sobic004G173600--Sobic001G049200 Sobic010G002400 Sobic010G002400 Sobic004G173600--Sobic010G002400 Sobic004G173600--Sobic002G187300 Sobic003G280300 Sobic003G280300 Sobic004G173600--Sobic003G280300 Sobic006G176600 Sobic006G176600 Sobic004G173600--Sobic006G176600 Sobic001G540100 Sobic001G540100 Sobic004G173600--Sobic001G540100 Sobic004G132300 Sobic004G132300 Sobic004G173600--Sobic004G132300
Octagon: transcription factors


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