Gene annotation
Transcriptome id Sobic.003G047100.1
Synonym Sb03g004100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
UniProt C5XMT6
Pfam PF02775 PF00205 PF02776
Panther DB PTHR18968 PTHR18968:SF6
NCBI CDD -
KEGG Orthology K12261; 2-hydroxyacyl-CoA lyase 1
Gene Ontology GO:0003824; catalytic activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT5G17380 : Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
RAP-DB (Rice) LOC_Os01g32080.1 : thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035737
Brachypodium KQK03262
Barley HORVU3Hr1G097230.4 , HORVU3Hr1G097230.5 , HORVU3Hr1G097230.2 , HORVU3Hr1G097230.3 , HORVU3Hr1G097230.1
Wheat TraesCS3D02G442100 , TraesCS3B02G486100 , TraesCS3A02G449400
Populus -


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cDNA sequences
Sobic.003G047100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
2 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
3 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
4 Sobic.003G259700 transmembrane protein 93, putative, expressed -
5 Sobic.003G087000 expressed protein -
6 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
7 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
8 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
9 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
10 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
12 Sobic.009G234800 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
13 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
14 Sobic.010G081900 peroxisomal multifunctional enzyme type 2, putative, expressed -
15 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
16 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
17 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
18 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
19 Sobic.003G321300 disease resistance protein RPS2, putative, expressed K13459: disease resistance protein RPS2
20 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein


Gene co-expression network
sample Sobic003G047100 Sobic003G047100 Sobic002G187300 Sobic002G187300 Sobic003G047100--Sobic002G187300 Sobic010G016400 Sobic010G016400 Sobic003G047100--Sobic010G016400 Sobic009G139800 Sobic009G139800 Sobic003G047100--Sobic009G139800 Sobic003G259700 Sobic003G259700 Sobic003G047100--Sobic003G259700 Sobic003G087000 Sobic003G087000 Sobic003G047100--Sobic003G087000 Sobic001G109300 Sobic001G109300 Sobic003G047100--Sobic001G109300 Sobic003G428200 Sobic003G428200 Sobic003G047100--Sobic003G428200 Sobic002G113800 Sobic002G113800 Sobic003G047100--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic003G047100--Sobic005G139400 Sobic002G187300--Sobic003G047100 Sobic006G002700 Sobic006G002700 Sobic002G187300--Sobic006G002700 Sobic009G088100 Sobic009G088100 Sobic002G187300--Sobic009G088100 Sobic004G348900 Sobic004G348900 Sobic002G187300--Sobic004G348900 Sobic002G187300--Sobic001G109300 Sobic006G252200 Sobic006G252200 Sobic002G187300--Sobic006G252200 Sobic010G080200 Sobic010G080200 Sobic002G187300--Sobic010G080200 Sobic004G130900 Sobic004G130900 Sobic002G187300--Sobic004G130900 Sobic004G173600 Sobic004G173600 Sobic002G187300--Sobic004G173600 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic006G114400 Sobic006G114400 Sobic009G139800--Sobic006G114400 Sobic009G139800--Sobic001G109300 Sobic008G113600 Sobic008G113600 Sobic009G139800--Sobic008G113600 Sobic009G139800--Sobic003G428200 Sobic002G141700 Sobic002G141700 Sobic009G139800--Sobic002G141700 Sobic001G058100 Sobic001G058100 Sobic009G139800--Sobic001G058100 Sobic009G139800--Sobic003G087000 Sobic003G280300 Sobic003G280300 Sobic009G139800--Sobic003G280300 Sobic001G010700 Sobic001G010700 Sobic009G139800--Sobic001G010700 Sobic003G259700--Sobic002G113800 Sobic003G259700--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic003G259700--Sobic010G046300 Sobic001G481700 Sobic001G481700 Sobic003G259700--Sobic001G481700 Sobic003G259700--Sobic003G047100 Sobic010G044200 Sobic010G044200 Sobic003G259700--Sobic010G044200 Sobic007G142500 Sobic007G142500 Sobic003G259700--Sobic007G142500 Sobic004G224900 Sobic004G224900 Sobic003G259700--Sobic004G224900 Sobic003G259700--Sobic006G114400 Sobic010G064600 Sobic010G064600 Sobic003G087000--Sobic010G064600 Sobic010G261600 Sobic010G261600 Sobic003G087000--Sobic010G261600 Sobic003G087000--Sobic006G114400 Sobic008G093000 Sobic008G093000 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic004G228800 Sobic004G228800 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic003G087000--Sobic009G139800 Sobic007G176200 Sobic007G176200 Sobic001G109300--Sobic007G176200 Sobic001G109300--Sobic009G139800 Sobic001G109300--Sobic006G252200 Sobic001G109300--Sobic001G010700 Sobic001G109300--Sobic003G428200 Sobic003G330500 Sobic003G330500 Sobic001G109300--Sobic003G330500 Sobic001G281900 Sobic001G281900 Sobic001G109300--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic009G117200 Sobic009G117200 Sobic003G428200--Sobic009G117200 Sobic004G204800 Sobic004G204800 Sobic003G428200--Sobic004G204800 Sobic003G428200--Sobic001G010700 Sobic003G428200--Sobic009G139800 Sobic007G076300 Sobic007G076300 Sobic003G428200--Sobic007G076300 Sobic003G428200--Sobic001G109300 Sobic009G093200 Sobic009G093200 Sobic003G428200--Sobic009G093200 Sobic002G257400 Sobic002G257400 Sobic003G428200--Sobic002G257400 Sobic003G428200--Sobic007G176200 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic002G113800--Sobic003G259700 Sobic001G033500 Sobic001G033500 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic002G113800--Sobic006G114400 Sobic002G113800--Sobic007G142500 Sobic002G113800--Sobic006G217700 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900
Octagon: transcription factors


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