Gene annotation
Transcriptome id Sobic.003G259700.1
Synonym Sb03g031380
Functional annotation transmembrane protein 93, putative, expressed
UniProt C5XGS7
Pfam PF07019
Panther DB PTHR20994 PTHR20994:SF0
NCBI CDD KOG4455; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT5G49540 : Rab5-interacting family protein
RAP-DB (Rice) LOC_Os01g49026.1 : transmembrane protein 93, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK09217 , KQK09216
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G259700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
2 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
3 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
4 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
5 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
6 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
7 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
8 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
9 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
10 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
11 Sobic.003G054900 KIP1, putative, expressed -
12 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
13 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
14 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
15 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
16 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
17 Sobic.001G058100 thioredoxin, putative, expressed -
18 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
19 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
20 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G259700 Sobic003G259700 Sobic002G113800 Sobic002G113800 Sobic003G259700--Sobic002G113800 Sobic001G010400 Sobic001G010400 Sobic003G259700--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic003G259700--Sobic010G046300 Sobic001G481700 Sobic001G481700 Sobic003G259700--Sobic001G481700 Sobic003G047100 Sobic003G047100 Sobic003G259700--Sobic003G047100 Sobic010G044200 Sobic010G044200 Sobic003G259700--Sobic010G044200 Sobic007G142500 Sobic007G142500 Sobic003G259700--Sobic007G142500 Sobic004G224900 Sobic004G224900 Sobic003G259700--Sobic004G224900 Sobic006G114400 Sobic006G114400 Sobic003G259700--Sobic006G114400 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic002G113800--Sobic003G259700 Sobic001G033500 Sobic001G033500 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic002G113800--Sobic006G114400 Sobic002G113800--Sobic007G142500 Sobic006G217700 Sobic006G217700 Sobic002G113800--Sobic006G217700 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic010G046300--Sobic001G481700 Sobic010G046300--Sobic010G151000 Sobic008G073300 Sobic008G073300 Sobic010G046300--Sobic008G073300 Sobic010G046300--Sobic002G113800 Sobic007G045600 Sobic007G045600 Sobic010G046300--Sobic007G045600 Sobic005G003800 Sobic005G003800 Sobic010G046300--Sobic005G003800 Sobic007G118000 Sobic007G118000 Sobic010G046300--Sobic007G118000 Sobic006G220700 Sobic006G220700 Sobic010G046300--Sobic006G220700 Sobic010G046300--Sobic004G224900 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic002G187300 Sobic002G187300 Sobic003G047100--Sobic002G187300 Sobic003G047100--Sobic010G016400 Sobic009G139800 Sobic009G139800 Sobic003G047100--Sobic009G139800 Sobic003G047100--Sobic003G259700 Sobic003G087000 Sobic003G087000 Sobic003G047100--Sobic003G087000 Sobic001G109300 Sobic001G109300 Sobic003G047100--Sobic001G109300 Sobic003G428200 Sobic003G428200 Sobic003G047100--Sobic003G428200 Sobic003G047100--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic003G047100--Sobic005G139400 Sobic010G044200--Sobic004G224900 Sobic001G058100 Sobic001G058100 Sobic010G044200--Sobic001G058100 Sobic007G076300 Sobic007G076300 Sobic010G044200--Sobic007G076300 Sobic010G044200--Sobic001G481700 Sobic006G252200 Sobic006G252200 Sobic010G044200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic010G044200--Sobic003G330500 Sobic010G044200--Sobic007G176200 Sobic002G257400 Sobic002G257400 Sobic010G044200--Sobic002G257400 Sobic004G138800 Sobic004G138800 Sobic010G044200--Sobic004G138800 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic001G461900 Sobic001G461900 Sobic007G142500--Sobic001G461900 Sobic003G261400 Sobic003G261400 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic004G335000 Sobic004G335000 Sobic007G142500--Sobic004G335000 Sobic002G281300 Sobic002G281300 Sobic007G142500--Sobic002G281300 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic006G114400--Sobic003G087000 Sobic006G114400--Sobic002G113800 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic009G225000 Sobic009G225000 Sobic006G114400--Sobic009G225000
Octagon: transcription factors


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