Gene annotation
Transcriptome id Sobic.010G081900.1
Synonym SCP2, ATSCP2, Sb10g007100
Functional annotation peroxisomal multifunctional enzyme type 2, putative, expressed
UniProt C5Z6G7
Pfam PF02036
Panther DB PTHR10094 PTHR10094:SF17
NCBI CDD KOG4170; 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42890 : sterol carrier protein 2
RAP-DB (Rice) LOC_Os02g52720.1 : peroxisomal multifunctional enzyme type 2, putative, expressed
MaizeGDB (Corn) Zm00025a049582
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.010G081900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein
2 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
3 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
4 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
5 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.008G150300 Lg106, putative, expressed -
8 Sobic.001G110400 - -
9 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
10 Sobic.002G187300 calmodulin-binding protein, putative, expressed -
11 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
14 Sobic.010G044200 GLTP domain containing protein, putative, expressed -
15 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
16 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
17 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
18 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
19 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
20 Sobic.001G199300 GIL1, putative, expressed -


Gene co-expression network
sample Sobic010G081900 Sobic010G081900 Sobic003G428200 Sobic003G428200 Sobic010G081900--Sobic003G428200 Sobic003G047100 Sobic003G047100 Sobic010G081900--Sobic003G047100 Sobic001G109300 Sobic001G109300 Sobic010G081900--Sobic001G109300 Sobic001G478000 Sobic001G478000 Sobic010G081900--Sobic001G478000 Sobic001G281900 Sobic001G281900 Sobic010G081900--Sobic001G281900 Sobic003G330500 Sobic003G330500 Sobic010G081900--Sobic003G330500 Sobic008G150300 Sobic008G150300 Sobic010G081900--Sobic008G150300 Sobic001G110400 Sobic001G110400 Sobic010G081900--Sobic001G110400 Sobic006G002700 Sobic006G002700 Sobic010G081900--Sobic006G002700 Sobic009G117200 Sobic009G117200 Sobic003G428200--Sobic009G117200 Sobic004G204800 Sobic004G204800 Sobic003G428200--Sobic004G204800 Sobic001G010700 Sobic001G010700 Sobic003G428200--Sobic001G010700 Sobic009G139800 Sobic009G139800 Sobic003G428200--Sobic009G139800 Sobic007G076300 Sobic007G076300 Sobic003G428200--Sobic007G076300 Sobic003G428200--Sobic001G109300 Sobic009G093200 Sobic009G093200 Sobic003G428200--Sobic009G093200 Sobic002G257400 Sobic002G257400 Sobic003G428200--Sobic002G257400 Sobic007G176200 Sobic007G176200 Sobic003G428200--Sobic007G176200 Sobic002G187300 Sobic002G187300 Sobic003G047100--Sobic002G187300 Sobic010G016400 Sobic010G016400 Sobic003G047100--Sobic010G016400 Sobic003G047100--Sobic009G139800 Sobic003G259700 Sobic003G259700 Sobic003G047100--Sobic003G259700 Sobic003G087000 Sobic003G087000 Sobic003G047100--Sobic003G087000 Sobic003G047100--Sobic001G109300 Sobic003G047100--Sobic003G428200 Sobic002G113800 Sobic002G113800 Sobic003G047100--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic003G047100--Sobic005G139400 Sobic001G109300--Sobic007G176200 Sobic001G109300--Sobic009G139800 Sobic006G252200 Sobic006G252200 Sobic001G109300--Sobic006G252200 Sobic001G109300--Sobic001G010700 Sobic001G109300--Sobic003G428200 Sobic001G109300--Sobic003G330500 Sobic001G109300--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic009G240900 Sobic009G240900 Sobic001G478000--Sobic009G240900 Sobic009G144300 Sobic009G144300 Sobic001G478000--Sobic009G144300 Sobic001G388600 Sobic001G388600 Sobic001G478000--Sobic001G388600 Sobic001G478000--Sobic007G076300 Sobic002G255100 Sobic002G255100 Sobic001G478000--Sobic002G255100 Sobic004G138800 Sobic004G138800 Sobic001G478000--Sobic004G138800 Sobic004G216800 Sobic004G216800 Sobic001G478000--Sobic004G216800 Sobic001G096100 Sobic001G096100 Sobic001G478000--Sobic001G096100 Sobic009G227400 Sobic009G227400 Sobic001G478000--Sobic009G227400 Sobic001G281900--Sobic003G330500 Sobic005G105500 Sobic005G105500 Sobic001G281900--Sobic005G105500 Sobic001G281900--Sobic008G150300 Sobic001G281900--Sobic006G252200 Sobic001G196100 Sobic001G196100 Sobic001G281900--Sobic001G196100 Sobic001G281900--Sobic001G458700 Sobic001G281900--Sobic007G176200 Sobic001G338400 Sobic001G338400 Sobic001G281900--Sobic001G338400 Sobic001G281900--Sobic001G096100 Sobic004G224900 Sobic004G224900 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic003G170300 Sobic003G170300 Sobic008G150300--Sobic003G170300 Sobic008G150300--Sobic001G281900 Sobic008G150300--Sobic001G338400 Sobic001G458800 Sobic001G458800 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic002G410700 Sobic002G410700 Sobic008G150300--Sobic002G410700 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic006G211800 Sobic006G211800 Sobic008G150300--Sobic006G211800 Sobic001G110400--Sobic006G002700 Sobic001G230100 Sobic001G230100 Sobic001G110400--Sobic001G230100 Sobic001G007600 Sobic001G007600 Sobic001G110400--Sobic001G007600 Sobic009G104000 Sobic009G104000 Sobic001G110400--Sobic009G104000 Sobic001G110400--Sobic006G252200 Sobic010G038700 Sobic010G038700 Sobic001G110400--Sobic010G038700 Sobic001G110400--Sobic004G224900 Sobic001G005900 Sobic001G005900 Sobic001G110400--Sobic001G005900 Sobic001G021300 Sobic001G021300 Sobic001G110400--Sobic001G021300 Sobic006G002700--Sobic003G330500 Sobic006G002700--Sobic001G007600 Sobic006G002700--Sobic001G110400 Sobic006G002700--Sobic004G224900 Sobic009G238900 Sobic009G238900 Sobic006G002700--Sobic009G238900 Sobic006G002700--Sobic001G096100 Sobic006G002700--Sobic001G502200 Sobic009G088100 Sobic009G088100 Sobic006G002700--Sobic009G088100 Sobic002G392800 Sobic002G392800 Sobic006G002700--Sobic002G392800
Octagon: transcription factors


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