Gene annotation
Transcriptome id Sobic.001G007600.1
Synonym Sb01g000770, AGD8
Functional annotation GTPase-activating protein, putative, expressed
UniProt C5WS02
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF275
NCBI CDD KOG0706; Predicted GTPase-activating protein
KEGG Orthology K12493; ADP-ribosylation factor GTPase-activating protein 2/3
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT4G17890 : ARF-GAP domain 8
RAP-DB (Rice) LOC_Os03g63710.1 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a051821 , Zm00025a016312 , Zm00025a009091
Brachypodium KQK12023 , KQK12024 , KQK12025
Barley HORVU1Hr1G047800.14 , HORVU1Hr1G047800.15 , HORVU1Hr1G047800.16 , HORVU5Hr1G123590.1 , HORVU1Hr1G047800.11 , HORVU5Hr1G123590.2 , HORVU1Hr1G047800.19 , HORVU1Hr1G047800.20 , HORVU1Hr1G047800.23 , HORVU1Hr1G047800.22 , HORVU1Hr1G047800.8 , HORVU1Hr1G047800.6 , HORVU1Hr1G047800.7 , HORVU1Hr1G047800.2
Wheat TraesCS5D02G554100 , TraesCS5B02G554600 , TraesCS5B02G554600 , TraesCS1A02G193000 , TraesCS1D02G196700 , TraesCS4A02G323700 , TraesCS4A02G323700
Populus -


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cDNA sequences
Sobic.001G007600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
2 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
3 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
5 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
6 Sobic.003G368500 Yip1 domain containing protein, expressed -
7 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
8 Sobic.009G182300 - -
9 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
10 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.010G038700 expressed protein -
12 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
13 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
14 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
15 Sobic.003G330500 peptidase, T1 family, putative, expressed -
16 Sobic.003G219800 transferase family protein, putative, expressed -
17 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
18 Sobic.008G127500 expressed protein -
19 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
20 Sobic.002G214900 polygalacturonase, putative, expressed -


Gene co-expression network
sample Sobic001G007600 Sobic001G007600 Sobic004G138800 Sobic004G138800 Sobic001G007600--Sobic004G138800 Sobic009G067000 Sobic009G067000 Sobic001G007600--Sobic009G067000 Sobic001G418900 Sobic001G418900 Sobic001G007600--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic001G007600--Sobic003G443300 Sobic001G505500 Sobic001G505500 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic006G252200 Sobic006G252200 Sobic001G007600--Sobic006G252200 Sobic009G182300 Sobic009G182300 Sobic001G007600--Sobic009G182300 Sobic007G076300 Sobic007G076300 Sobic001G007600--Sobic007G076300 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic004G138800--Sobic001G007600 Sobic004G138800--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic009G067000--Sobic007G176200 Sobic009G067000--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic009G067000--Sobic001G458700 Sobic009G067000--Sobic001G007600 Sobic002G428200 Sobic002G428200 Sobic009G067000--Sobic002G428200 Sobic001G010700 Sobic001G010700 Sobic009G067000--Sobic001G010700 Sobic007G114200 Sobic007G114200 Sobic009G067000--Sobic007G114200 Sobic009G067000--Sobic004G224900 Sobic001G283200 Sobic001G283200 Sobic009G067000--Sobic001G283200 Sobic007G115100 Sobic007G115100 Sobic001G418900--Sobic007G115100 Sobic001G418900--Sobic003G443300 Sobic001G418900--Sobic004G138800 Sobic004G310300 Sobic004G310300 Sobic001G418900--Sobic004G310300 Sobic002G257300 Sobic002G257300 Sobic001G418900--Sobic002G257300 Sobic001G418900--Sobic009G119900 Sobic003G155400 Sobic003G155400 Sobic001G418900--Sobic003G155400 Sobic005G188100 Sobic005G188100 Sobic001G418900--Sobic005G188100 Sobic005G110800 Sobic005G110800 Sobic001G418900--Sobic005G110800 Sobic001G304400 Sobic001G304400 Sobic003G443300--Sobic001G304400 Sobic003G443300--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic003G443300--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic003G443300--Sobic001G085400 Sobic006G216600 Sobic006G216600 Sobic003G443300--Sobic006G216600 Sobic006G156000 Sobic006G156000 Sobic003G443300--Sobic006G156000 Sobic009G212200 Sobic009G212200 Sobic003G443300--Sobic009G212200 Sobic003G249700 Sobic003G249700 Sobic003G443300--Sobic003G249700 Sobic003G219800 Sobic003G219800 Sobic003G443300--Sobic003G219800 Sobic001G505500--Sobic004G138800 Sobic001G505500--Sobic001G418900 Sobic001G505500--Sobic007G115100 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G334300 Sobic001G334300 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500 Sobic010G213400 Sobic010G213400 Sobic003G368500--Sobic010G213400 Sobic010G018400 Sobic010G018400 Sobic003G368500--Sobic010G018400 Sobic001G224400 Sobic001G224400 Sobic003G368500--Sobic001G224400 Sobic003G368500--Sobic003G155400 Sobic003G368500--Sobic004G310300 Sobic004G284500 Sobic004G284500 Sobic003G368500--Sobic004G284500 Sobic003G368500--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic003G368500--Sobic007G051000 Sobic003G368500--Sobic001G418900 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic009G182300--Sobic001G007600 Sobic009G182300--Sobic004G138800 Sobic009G182300--Sobic001G505500 Sobic009G182300--Sobic001G418900 Sobic009G182300--Sobic003G443300 Sobic005G017300 Sobic005G017300 Sobic009G182300--Sobic005G017300 Sobic010G210000 Sobic010G210000 Sobic009G182300--Sobic010G210000 Sobic004G344500 Sobic004G344500 Sobic009G182300--Sobic004G344500 Sobic003G127700 Sobic003G127700 Sobic009G182300--Sobic003G127700 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic002G257400 Sobic002G257400 Sobic007G076300--Sobic002G257400 Sobic007G076300--Sobic003G330500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700
Octagon: transcription factors


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