Gene annotation
Transcriptome id Sobic.006G017100.1,Sobic.006G017100.2
Synonym Sb06g001630
Functional annotation ribosomal L18p/L5e family protein, putative, expressed
UniProt C5YC82
Pfam PF00861
Panther DB PTHR12899 PTHR12899:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G27820 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os01g15290.1,LOC_Os01g15290.2 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) Zm00025a012353
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
2 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
3 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
4 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
5 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
6 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
7 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
8 Sobic.003G308000 expressed protein K15902: PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
9 Sobic.010G038700 expressed protein -
10 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
11 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
12 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
13 Sobic.008G132400 expressed protein -
14 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
15 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
16 Sobic.004G078000 citrate synthase, putative, expressed K01647: CS, citrate synthase
17 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
18 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
19 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
20 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12


Gene co-expression network
sample Sobic006G017100 Sobic006G017100 Sobic004G213200 Sobic004G213200 Sobic006G017100--Sobic004G213200 Sobic004G138800 Sobic004G138800 Sobic006G017100--Sobic004G138800 Sobic002G255100 Sobic002G255100 Sobic006G017100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic006G017100--Sobic001G481700 Sobic003G160900 Sobic003G160900 Sobic006G017100--Sobic003G160900 Sobic009G212300 Sobic009G212300 Sobic006G017100--Sobic009G212300 Sobic001G505500 Sobic001G505500 Sobic006G017100--Sobic001G505500 Sobic003G308000 Sobic003G308000 Sobic006G017100--Sobic003G308000 Sobic010G038700 Sobic010G038700 Sobic006G017100--Sobic010G038700 Sobic004G213200--Sobic002G255100 Sobic009G227400 Sobic009G227400 Sobic004G213200--Sobic009G227400 Sobic004G213200--Sobic006G017100 Sobic003G363800 Sobic003G363800 Sobic004G213200--Sobic003G363800 Sobic006G035900 Sobic006G035900 Sobic004G213200--Sobic006G035900 Sobic008G132400 Sobic008G132400 Sobic004G213200--Sobic008G132400 Sobic002G371100 Sobic002G371100 Sobic004G213200--Sobic002G371100 Sobic004G216800 Sobic004G216800 Sobic004G213200--Sobic004G216800 Sobic006G216600 Sobic006G216600 Sobic004G213200--Sobic006G216600 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G049300 Sobic002G049300 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic002G255100--Sobic004G216800 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800 Sobic001G505500--Sobic004G138800 Sobic001G505500--Sobic001G418900 Sobic007G115100 Sobic007G115100 Sobic001G505500--Sobic007G115100 Sobic001G505500--Sobic007G076300 Sobic007G092100 Sobic007G092100 Sobic001G505500--Sobic007G092100 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic001G505500--Sobic009G227400 Sobic001G513500 Sobic001G513500 Sobic001G505500--Sobic001G513500 Sobic003G308000--Sobic002G371100 Sobic003G308000--Sobic009G212300 Sobic003G308000--Sobic002G255100 Sobic003G308000--Sobic009G234400 Sobic003G308000--Sobic010G100000 Sobic003G308000--Sobic001G096100 Sobic003G308000--Sobic006G017100 Sobic005G091700 Sobic005G091700 Sobic003G308000--Sobic005G091700 Sobic003G308000--Sobic001G481700 Sobic010G038700--Sobic001G096100 Sobic009G045800 Sobic009G045800 Sobic010G038700--Sobic009G045800 Sobic001G018200 Sobic001G018200 Sobic010G038700--Sobic001G018200 Sobic010G038700--Sobic003G330500 Sobic004G262300 Sobic004G262300 Sobic010G038700--Sobic004G262300 Sobic010G038700--Sobic001G481700 Sobic008G127500 Sobic008G127500 Sobic010G038700--Sobic008G127500 Sobic009G168000 Sobic009G168000 Sobic010G038700--Sobic009G168000 Sobic010G038700--Sobic001G025600
Octagon: transcription factors


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