Gene annotation
Transcriptome id Sobic.004G078000.1,Sobic.004G078000.2
Synonym ATCS, CSY4, Sb04g006440
Functional annotation citrate synthase, putative, expressed
UniProt A0A194YPD4 , A0A194YND2
Pfam PF00285
Panther DB PTHR11739 PTHR11739:SF8
NCBI CDD -
KEGG Orthology K01647; CS, citrate synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44350 : Citrate synthase family protein
RAP-DB (Rice) LOC_Os11g33240.2,LOC_Os11g33240.1 : citrate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a019659 , Zm00025a034674 , Zm00025a034676
Brachypodium KQJ93829
Barley HORVU6Hr1G033980.7 , HORVU6Hr1G033980.6 , HORVU6Hr1G033980.5 , HORVU6Hr1G033980.4 , HORVU6Hr1G033980.3 , HORVU6Hr1G033980.2 , HORVU6Hr1G033980.1 , HORVU6Hr1G033980.9 , HORVU6Hr1G033980.8 , HORVU6Hr1G033980.10
Wheat TraesCS6B02G194700 , TraesCS6B02G194700 , TraesCS6A02G167300 , TraesCS6A02G167300 , TraesCS6D02G155800 , TraesCS6D02G155800
Populus PNT56158 , PNT56159 , PNT56157 , PNT56162 , PNT56163 , PNT56160 , PNT56161


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cDNA sequences
Sobic.004G078000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
2 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
3 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
4 Sobic.003G209000 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
5 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
6 Sobic.004G170400 ubiquinol-cytochrome C reductase hinge protein, putative, expressed K00416: QCR6, ubiquinol-cytochrome c reductase subunit 6
7 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
8 Sobic.009G054000 expressed protein -
9 Sobic.009G242400 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
10 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
11 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
12 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
13 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
14 Sobic.001G404800 CHCH domain containing protein, expressed K03952: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
15 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
16 Sobic.006G017100 ribosomal L18p/L5e family protein, putative, expressed -
17 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
18 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
19 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
20 Sobic.010G154700 - -


Gene co-expression network
sample Sobic004G078000 Sobic004G078000 Sobic002G356400 Sobic002G356400 Sobic004G078000--Sobic002G356400 Sobic001G350600 Sobic001G350600 Sobic004G078000--Sobic001G350600 Sobic010G023800 Sobic010G023800 Sobic004G078000--Sobic010G023800 Sobic003G209000 Sobic003G209000 Sobic004G078000--Sobic003G209000 Sobic001G342200 Sobic001G342200 Sobic004G078000--Sobic001G342200 Sobic004G170400 Sobic004G170400 Sobic004G078000--Sobic004G170400 Sobic001G040100 Sobic001G040100 Sobic004G078000--Sobic001G040100 Sobic009G054000 Sobic009G054000 Sobic004G078000--Sobic009G054000 Sobic009G242400 Sobic009G242400 Sobic004G078000--Sobic009G242400 Sobic002G309700 Sobic002G309700 Sobic002G356400--Sobic002G309700 Sobic001G465800 Sobic001G465800 Sobic002G356400--Sobic001G465800 Sobic009G119900 Sobic009G119900 Sobic002G356400--Sobic009G119900 Sobic002G356400--Sobic001G350600 Sobic002G356400--Sobic004G170400 Sobic004G260200 Sobic004G260200 Sobic002G356400--Sobic004G260200 Sobic001G404800 Sobic001G404800 Sobic002G356400--Sobic001G404800 Sobic004G259200 Sobic004G259200 Sobic002G356400--Sobic004G259200 Sobic002G356400--Sobic003G209000 Sobic001G350600--Sobic004G170400 Sobic001G350600--Sobic004G259200 Sobic001G350600--Sobic002G356400 Sobic001G074700 Sobic001G074700 Sobic001G350600--Sobic001G074700 Sobic001G350600--Sobic001G465800 Sobic001G350600--Sobic003G209000 Sobic001G350600--Sobic001G404800 Sobic001G350600--Sobic009G119900 Sobic004G030000 Sobic004G030000 Sobic001G350600--Sobic004G030000 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic003G209000--Sobic004G259200 Sobic003G209000--Sobic001G404800 Sobic002G418400 Sobic002G418400 Sobic003G209000--Sobic002G418400 Sobic001G018500 Sobic001G018500 Sobic003G209000--Sobic001G018500 Sobic006G083500 Sobic006G083500 Sobic003G209000--Sobic006G083500 Sobic003G215700 Sobic003G215700 Sobic003G209000--Sobic003G215700 Sobic007G051000 Sobic007G051000 Sobic003G209000--Sobic007G051000 Sobic003G209000--Sobic009G119900 Sobic002G398901 Sobic002G398901 Sobic003G209000--Sobic002G398901 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic004G170400--Sobic001G350600 Sobic004G170400--Sobic004G259200 Sobic004G170400--Sobic001G074700 Sobic004G170400--Sobic001G465800 Sobic004G170400--Sobic009G119900 Sobic004G170400--Sobic002G356400 Sobic004G170400--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic004G170400--Sobic004G310300 Sobic004G170400--Sobic002G418400 Sobic005G112800 Sobic005G112800 Sobic001G040100--Sobic005G112800 Sobic003G219800 Sobic003G219800 Sobic001G040100--Sobic003G219800 Sobic001G040100--Sobic002G356400 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic003G410500 Sobic003G410500 Sobic001G040100--Sobic003G410500 Sobic006G156000 Sobic006G156000 Sobic001G040100--Sobic006G156000 Sobic001G040100--Sobic002G418400 Sobic002G257300 Sobic002G257300 Sobic001G040100--Sobic002G257300 Sobic004G123000 Sobic004G123000 Sobic009G054000--Sobic004G123000 Sobic009G054000--Sobic001G404800 Sobic009G054000--Sobic003G209000 Sobic003G129800 Sobic003G129800 Sobic009G054000--Sobic003G129800 Sobic010G028200 Sobic010G028200 Sobic009G054000--Sobic010G028200 Sobic009G179100 Sobic009G179100 Sobic009G054000--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic009G054000--Sobic001G334300 Sobic009G101700 Sobic009G101700 Sobic009G054000--Sobic009G101700 Sobic003G155400 Sobic003G155400 Sobic009G054000--Sobic003G155400 Sobic006G213000 Sobic006G213000 Sobic009G242400--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G242400--Sobic001G226500 Sobic006G137100 Sobic006G137100 Sobic009G242400--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic009G242400--Sobic003G387900 Sobic002G081600 Sobic002G081600 Sobic009G242400--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G242400--Sobic003G346600 Sobic004G280700 Sobic004G280700 Sobic009G242400--Sobic004G280700 Sobic006G067800 Sobic006G067800 Sobic009G242400--Sobic006G067800 Sobic009G050300 Sobic009G050300 Sobic009G242400--Sobic009G050300
Octagon: transcription factors


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