Gene annotation
Transcriptome id Sobic.009G234800.1,Sobic.009G234800.2
Synonym APA1, ATAPA1, Sb09g028740
Functional annotation aspartic proteinase oryzasin-1 precursor, putative, expressed
UniProt A0A1B6PA25 , A0A1B6PAU7
Pfam PF03489 PF05184 PF00026
Panther DB PTHR13683 PTHR13683:SF286
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology K08245; phytepsin
Gene Ontology GO:0006629; lipid metabolic process GO:0006508proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G11910 : aspartic proteinase A1
RAP-DB (Rice) LOC_Os05g49200.1 : aspartic proteinase oryzasin-1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a049745 , Zm00025a026743 , Zm00025a039633 , Zm00025a044601 , Zm00025a037459 , Zm00025a033525 , Zm00025a033526 , Zm00025a034792 , Zm00025a040909 , Zm00025a042937 , Zm00025a036631 , Zm00025a018052 , Zm00025a039265 , Zm00025a017397 , Zm00025a055336 , Zm00025a024202
Brachypodium KQK04817
Barley HORVU1Hr1G089360.1 , HORVU1Hr1G089360.3 , HORVU1Hr1G089360.2 , HORVU1Hr1G089360.5 , HORVU1Hr1G089360.4 , HORVU1Hr1G089360.7 , HORVU1Hr1G089360.6
Wheat TraesCS1D02G412200 , TraesCS1D02G412200 , TraesCS1B02G434000 , TraesCS1A02G404500 , TraesCS1A02G404500 , TraesCS3D02G241400 , TraesCS3D02G241400
Populus PNT38968 , PNT38969


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cDNA sequences
Sobic.009G234800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
2 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
3 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
4 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
5 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
8 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
9 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
10 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
11 Sobic.008G044000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
12 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
13 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
14 Sobic.003G303300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K14454: aspartate aminotransferase, cytoplasmic
15 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
16 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
17 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
18 Sobic.002G409500 lipase precursor, putative, expressed -
19 Sobic.003G047100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K12261: 2-hydroxyacyl-CoA lyase 1
20 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic009G234800 Sobic009G234800 Sobic005G079900 Sobic005G079900 Sobic009G234800--Sobic005G079900 Sobic003G226200 Sobic003G226200 Sobic009G234800--Sobic003G226200 Sobic006G119200 Sobic006G119200 Sobic009G234800--Sobic006G119200 Sobic005G231900 Sobic005G231900 Sobic009G234800--Sobic005G231900 Sobic001G488500 Sobic001G488500 Sobic009G234800--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic009G234800--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic009G234800--Sobic004G246200 Sobic010G016400 Sobic010G016400 Sobic009G234800--Sobic010G016400 Sobic007G041400 Sobic007G041400 Sobic009G234800--Sobic007G041400 Sobic004G101900 Sobic004G101900 Sobic005G079900--Sobic004G101900 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic005G079900--Sobic001G512800 Sobic002G215700 Sobic002G215700 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic003G226200--Sobic009G234800 Sobic002G058500 Sobic002G058500 Sobic003G226200--Sobic002G058500 Sobic003G226200--Sobic005G079900 Sobic003G226200--Sobic007G041400 Sobic001G265600 Sobic001G265600 Sobic003G226200--Sobic001G265600 Sobic002G415900 Sobic002G415900 Sobic003G226200--Sobic002G415900 Sobic003G226200--Sobic007G068100 Sobic003G226200--Sobic002G215700 Sobic003G226200--Sobic004G101900 Sobic001G386400 Sobic001G386400 Sobic006G119200--Sobic001G386400 Sobic001G132000 Sobic001G132000 Sobic006G119200--Sobic001G132000 Sobic006G119200--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic006G119200--Sobic009G234800 Sobic006G119200--Sobic001G512800 Sobic006G119200--Sobic005G231900 Sobic004G347300 Sobic004G347300 Sobic006G119200--Sobic004G347300 Sobic004G162400 Sobic004G162400 Sobic005G231900--Sobic004G162400 Sobic005G231900--Sobic001G488500 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G216000 Sobic005G216000 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic002G304000 Sobic002G304000 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic001G488500--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic001G488500--Sobic005G152100 Sobic001G488500--Sobic004G246200 Sobic001G488500--Sobic005G231900 Sobic001G488500--Sobic002G322900 Sobic004G255000 Sobic004G255000 Sobic001G488500--Sobic004G255000 Sobic001G488500--Sobic005G079900 Sobic010G206000 Sobic010G206000 Sobic001G488500--Sobic010G206000 Sobic005G215900 Sobic005G215900 Sobic001G488500--Sobic005G215900 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic001G512800--Sobic002G322900 Sobic001G512800--Sobic010G206000 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic009G054500 Sobic009G054500 Sobic001G512800--Sobic009G054500 Sobic001G512800--Sobic005G079900 Sobic004G246200--Sobic005G152100 Sobic005G018500 Sobic005G018500 Sobic004G246200--Sobic005G018500 Sobic003G259200 Sobic003G259200 Sobic004G246200--Sobic003G259200 Sobic004G246200--Sobic004G255000 Sobic001G412700 Sobic001G412700 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic004G246200--Sobic002G322900 Sobic004G246200--Sobic009G054500 Sobic008G024400 Sobic008G024400 Sobic004G246200--Sobic008G024400 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic007G041400--Sobic001G488500 Sobic007G041400--Sobic005G079900 Sobic007G041400--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic007G041400--Sobic010G107000 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic009G211400 Sobic009G211400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600
Octagon: transcription factors


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