Gene annotation
Transcriptome id Sobic.002G322900.1
Synonym Sb02g035050
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
integral membrane protein DUF6 containing protein, expressed
UniProt C5XA48
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF68
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G64700 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os07g34110.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) Zm00025a048248
Brachypodium KQK15945
Barley HORVU2Hr1G045480.3 , HORVU2Hr1G045480.2 , HORVU2Hr1G045480.1 , HORVU2Hr1G045480.7 , HORVU2Hr1G045480.6 , HORVU2Hr1G045480.5 , HORVU2Hr1G045480.4 , HORVU2Hr1G045480.9 , HORVU2Hr1G045480.8 , HORVU2Hr1G045480.10
Wheat TraesCS2A02G219600 , TraesCS2D02G225400 , TraesCS2B02G245100
Populus -


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cDNA sequences
Sobic.002G322900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
2 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
3 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
4 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
5 Sobic.001G412700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
7 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
8 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
10 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
11 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
12 Sobic.008G024400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@thaumatin-like protein 1 precursor, putative, expressed -
13 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
14 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
15 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
16 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
17 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
19 Sobic.009G193700 transmembrane protein 56, putative, expressed -
20 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7


Gene co-expression network
sample Sobic002G322900 Sobic002G322900 Sobic004G236600 Sobic004G236600 Sobic002G322900--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic002G322900--Sobic005G152100 Sobic004G246200 Sobic004G246200 Sobic002G322900--Sobic004G246200 Sobic001G512800 Sobic001G512800 Sobic002G322900--Sobic001G512800 Sobic001G412700 Sobic001G412700 Sobic002G322900--Sobic001G412700 Sobic004G341200 Sobic004G341200 Sobic002G322900--Sobic004G341200 Sobic004G255000 Sobic004G255000 Sobic002G322900--Sobic004G255000 Sobic001G488500 Sobic001G488500 Sobic002G322900--Sobic001G488500 Sobic010G206000 Sobic010G206000 Sobic002G322900--Sobic010G206000 Sobic004G236600--Sobic001G488500 Sobic004G236600--Sobic005G152100 Sobic004G236600--Sobic002G322900 Sobic004G236600--Sobic004G255000 Sobic004G236600--Sobic004G246200 Sobic004G236600--Sobic001G412700 Sobic008G024400 Sobic008G024400 Sobic004G236600--Sobic008G024400 Sobic005G215900 Sobic005G215900 Sobic004G236600--Sobic005G215900 Sobic009G038501 Sobic009G038501 Sobic004G236600--Sobic009G038501 Sobic005G152100--Sobic004G246200 Sobic005G152100--Sobic004G236600 Sobic005G018500 Sobic005G018500 Sobic005G152100--Sobic005G018500 Sobic005G152100--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic005G152100--Sobic001G249300 Sobic003G259200 Sobic003G259200 Sobic005G152100--Sobic003G259200 Sobic005G152100--Sobic002G322900 Sobic009G054500 Sobic009G054500 Sobic005G152100--Sobic009G054500 Sobic005G152100--Sobic001G412700 Sobic004G246200--Sobic005G152100 Sobic004G246200--Sobic005G018500 Sobic004G246200--Sobic003G259200 Sobic004G246200--Sobic004G255000 Sobic004G246200--Sobic001G412700 Sobic004G260000 Sobic004G260000 Sobic004G246200--Sobic004G260000 Sobic004G246200--Sobic002G322900 Sobic004G246200--Sobic009G054500 Sobic004G246200--Sobic008G024400 Sobic003G138200 Sobic003G138200 Sobic001G512800--Sobic003G138200 Sobic001G512800--Sobic002G322900 Sobic001G512800--Sobic010G206000 Sobic001G512800--Sobic004G246200 Sobic002G409500 Sobic002G409500 Sobic001G512800--Sobic002G409500 Sobic009G029600 Sobic009G029600 Sobic001G512800--Sobic009G029600 Sobic010G248900 Sobic010G248900 Sobic001G512800--Sobic010G248900 Sobic001G512800--Sobic009G054500 Sobic005G079900 Sobic005G079900 Sobic001G512800--Sobic005G079900 Sobic001G412700--Sobic004G255000 Sobic001G412700--Sobic003G259200 Sobic001G412700--Sobic005G152100 Sobic003G269700 Sobic003G269700 Sobic001G412700--Sobic003G269700 Sobic001G412700--Sobic004G246200 Sobic001G212000 Sobic001G212000 Sobic001G412700--Sobic001G212000 Sobic001G412700--Sobic009G029600 Sobic001G412700--Sobic002G322900 Sobic001G412700--Sobic005G018500 Sobic001G089800 Sobic001G089800 Sobic004G341200--Sobic001G089800 Sobic004G341200--Sobic002G322900 Sobic009G167700 Sobic009G167700 Sobic004G341200--Sobic009G167700 Sobic004G341200--Sobic001G512800 Sobic009G193700 Sobic009G193700 Sobic004G341200--Sobic009G193700 Sobic004G341200--Sobic001G488500 Sobic001G003000 Sobic001G003000 Sobic004G341200--Sobic001G003000 Sobic004G341200--Sobic004G236600 Sobic003G338400 Sobic003G338400 Sobic004G341200--Sobic003G338400 Sobic004G255000--Sobic009G029600 Sobic004G255000--Sobic005G018500 Sobic004G255000--Sobic001G249300 Sobic004G255000--Sobic009G054500 Sobic001G280200 Sobic001G280200 Sobic004G255000--Sobic001G280200 Sobic004G255000--Sobic003G259200 Sobic004G255000--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic004G255000--Sobic003G219600 Sobic004G255000--Sobic005G152100 Sobic001G488500--Sobic004G236600 Sobic001G488500--Sobic005G152100 Sobic001G488500--Sobic004G246200 Sobic005G231900 Sobic005G231900 Sobic001G488500--Sobic005G231900 Sobic001G488500--Sobic002G322900 Sobic001G488500--Sobic004G255000 Sobic001G488500--Sobic005G079900 Sobic001G488500--Sobic010G206000 Sobic001G488500--Sobic005G215900 Sobic010G206000--Sobic001G512800 Sobic010G206000--Sobic004G246200 Sobic010G206000--Sobic001G488500 Sobic010G206000--Sobic002G322900 Sobic001G305800 Sobic001G305800 Sobic010G206000--Sobic001G305800 Sobic002G155400 Sobic002G155400 Sobic010G206000--Sobic002G155400 Sobic010G206000--Sobic001G412700 Sobic010G206000--Sobic004G255000 Sobic010G206000--Sobic005G018500
Octagon: transcription factors


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