Gene annotation
Transcriptome id Sobic.009G193700.1
Synonym Sb09g025230
Functional annotation transmembrane protein 56, putative, expressed
UniProt C5Z0U9
Pfam PF03798
Panther DB PTHR13439 PTHR13439:SF18
NCBI CDD KOG4561; Uncharacterized conserved protein, contains TBC domain
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G19645 : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
RAP-DB (Rice) LOC_Os05g43540.1 : transmembrane protein 56, putative, expressed
MaizeGDB (Corn) Zm00025a037917
Brachypodium -
Barley HORVU2Hr1G064740.1 , HORVU1Hr1G077290.3 , HORVU1Hr1G077290.1 , HORVU1Hr1G077290.2 , HORVU1Hr1G077290.4
Wheat TraesCS1B02G345300 , TraesCS1D02G334200 , TraesCS1A02G331700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G193700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
2 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
3 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
6 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
8 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
9 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
10 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
11 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
12 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
13 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
15 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
16 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
17 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
18 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
20 Sobic.003G322700 expressed protein -


Gene co-expression network
sample Sobic009G193700 Sobic009G193700 Sobic010G107000 Sobic010G107000 Sobic009G193700--Sobic010G107000 Sobic008G062200 Sobic008G062200 Sobic009G193700--Sobic008G062200 Sobic009G211400 Sobic009G211400 Sobic009G193700--Sobic009G211400 Sobic003G355600 Sobic003G355600 Sobic009G193700--Sobic003G355600 Sobic009G029600 Sobic009G029600 Sobic009G193700--Sobic009G029600 Sobic004G260000 Sobic004G260000 Sobic009G193700--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic009G193700--Sobic003G219600 Sobic006G199000 Sobic006G199000 Sobic009G193700--Sobic006G199000 Sobic001G089800 Sobic001G089800 Sobic009G193700--Sobic001G089800 Sobic010G107000--Sobic009G211400 Sobic001G325200 Sobic001G325200 Sobic010G107000--Sobic001G325200 Sobic010G107000--Sobic009G193700 Sobic010G107000--Sobic003G355600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic010G107000--Sobic009G029600 Sobic009G226300 Sobic009G226300 Sobic010G107000--Sobic009G226300 Sobic003G138200 Sobic003G138200 Sobic010G107000--Sobic003G138200 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic002G304000 Sobic002G304000 Sobic008G062200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic008G062200--Sobic009G054500 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic004G101900 Sobic004G101900 Sobic008G062200--Sobic004G101900 Sobic008G062200--Sobic009G193700 Sobic003G148800 Sobic003G148800 Sobic008G062200--Sobic003G148800 Sobic009G211400--Sobic003G219600 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic009G211400--Sobic003G138200 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G211400--Sobic009G193700 Sobic005G018500 Sobic005G018500 Sobic009G211400--Sobic005G018500 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic003G355600--Sobic002G304000 Sobic003G355600--Sobic009G226300 Sobic003G355600--Sobic010G107000 Sobic003G355600--Sobic006G199000 Sobic002G009700 Sobic002G009700 Sobic003G355600--Sobic002G009700 Sobic003G355600--Sobic009G193700 Sobic003G355600--Sobic004G101900 Sobic004G255000 Sobic004G255000 Sobic009G029600--Sobic004G255000 Sobic001G280200 Sobic001G280200 Sobic009G029600--Sobic001G280200 Sobic009G029600--Sobic003G219600 Sobic001G249300 Sobic001G249300 Sobic009G029600--Sobic001G249300 Sobic009G029600--Sobic009G211400 Sobic006G030700 Sobic006G030700 Sobic009G029600--Sobic006G030700 Sobic009G029600--Sobic009G054500 Sobic009G029600--Sobic002G215800 Sobic009G029600--Sobic009G226300 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic004G260000--Sobic008G062200 Sobic007G187300 Sobic007G187300 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic003G219600--Sobic009G211400 Sobic003G219600--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic003G219600--Sobic003G259200 Sobic003G219600--Sobic009G054500 Sobic003G219600--Sobic005G018500 Sobic003G219600--Sobic004G255000 Sobic003G219600--Sobic001G249300 Sobic003G219600--Sobic004G260000 Sobic003G219600--Sobic009G226300 Sobic008G153400 Sobic008G153400 Sobic006G199000--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic006G199000--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic006G199000--Sobic003G257100 Sobic006G199000--Sobic003G355600 Sobic006G199000--Sobic001G325200 Sobic001G150600 Sobic001G150600 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G091700 Sobic006G091700 Sobic006G199000--Sobic006G091700 Sobic001G003000 Sobic001G003000 Sobic001G089800--Sobic001G003000 Sobic004G341200 Sobic004G341200 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic006G271200 Sobic006G271200 Sobic001G089800--Sobic006G271200 Sobic009G167700 Sobic009G167700 Sobic001G089800--Sobic009G167700 Sobic002G244100 Sobic002G244100 Sobic001G089800--Sobic002G244100 Sobic004G102400 Sobic004G102400 Sobic001G089800--Sobic004G102400 Sobic010G064600 Sobic010G064600 Sobic001G089800--Sobic010G064600 Sobic003G354400 Sobic003G354400 Sobic001G089800--Sobic003G354400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.