Gene annotation
Transcriptome id Sobic.003G329400.1,Sobic.003G329400.3,Sobic.003G329400.2
Synonym Sb03g037550, PYD2
Functional annotation dihydropyrimidinase, putative, expressed
UniProt A0A1W0W027 , C5XMK0
Pfam PF01979
Panther DB PTHR11647 PTHR11647:SF1
NCBI CDD -
KEGG Orthology K01464; DPYS, dht, dihydropyrimidinase
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G12200 : pyrimidine 2
RAP-DB (Rice) LOC_Os01g59340.3,LOC_Os01g59340.1 : dihydropyrimidinase, putative, expressed
MaizeGDB (Corn) Zm00025a027152
Brachypodium KQK10237 , KQK10236 , KQK10235 , KQK10234 , KQK10233 , KQK10232 , PNT73058
Barley HORVU3Hr1G079000.20 , HORVU3Hr1G079000.21 , HORVU3Hr1G079000.22 , HORVU3Hr1G079000.23 , HORVU3Hr1G079000.24 , HORVU3Hr1G079000.25 , HORVU3Hr1G079000.26 , HORVU3Hr1G079000.27 , HORVU3Hr1G079000.15 , HORVU3Hr1G079000.14 , HORVU3Hr1G079000.17 , HORVU3Hr1G079000.16 , HORVU3Hr1G079000.11 , HORVU3Hr1G079000.10 , HORVU3Hr1G079000.13 , HORVU3Hr1G079000.12 , HORVU3Hr1G079000.19 , HORVU3Hr1G079000.18 , HORVU3Hr1G079000.1 , HORVU3Hr1G079000.3 , HORVU3Hr1G079000.2 , HORVU3Hr1G079000.5 , HORVU3Hr1G079000.4 , HORVU3Hr1G079000.7 , HORVU3Hr1G079000.6 , HORVU3Hr1G079000.9 , HORVU3Hr1G079000.8
Wheat TraesCS3B02G365000 , TraesCS3B02G365000 , TraesCS3D02G327500 , TraesCS3D02G327500 , TraesCS3A02G334000 , TraesCS3A02G334000
Populus -


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cDNA sequences
Sobic.003G329400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
2 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
5 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
6 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
7 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
9 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
10 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
11 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
12 Sobic.009G193700 transmembrane protein 56, putative, expressed -
13 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
14 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
15 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.003G388251 - K01166: ribonuclease T2
17 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
18 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
20 Sobic.002G270500 UBX domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G329400 Sobic003G329400 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic001G322700--Sobic003G329400 Sobic001G322700--Sobic001G325200 Sobic001G322700--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic001G322700--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic001G322700--Sobic004G101900 Sobic001G322700--Sobic010G107000 Sobic003G149200 Sobic003G149200 Sobic001G322700--Sobic003G149200 Sobic001G015500 Sobic001G015500 Sobic001G322700--Sobic001G015500 Sobic001G322700--Sobic002G304000 Sobic003G355600 Sobic003G355600 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic008G062200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic008G062200--Sobic009G054500 Sobic004G260000 Sobic004G260000 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic008G062200--Sobic004G101900 Sobic009G193700 Sobic009G193700 Sobic008G062200--Sobic009G193700 Sobic008G062200--Sobic003G148800 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic001G325200--Sobic003G355600 Sobic009G211400 Sobic009G211400 Sobic010G107000--Sobic009G211400 Sobic010G107000--Sobic001G325200 Sobic010G107000--Sobic009G193700 Sobic010G107000--Sobic003G355600 Sobic003G219600 Sobic003G219600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic009G029600 Sobic009G029600 Sobic010G107000--Sobic009G029600 Sobic010G107000--Sobic009G226300 Sobic003G138200 Sobic003G138200 Sobic010G107000--Sobic003G138200 Sobic002G304000--Sobic009G226300 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic002G304000--Sobic003G148800 Sobic002G215700 Sobic002G215700 Sobic002G304000--Sobic002G215700 Sobic002G304000--Sobic008G062200 Sobic002G304000--Sobic001G325200 Sobic002G304000--Sobic003G355600 Sobic003G105800 Sobic003G105800 Sobic002G304000--Sobic003G105800 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic009G226300--Sobic009G054500 Sobic001G249300 Sobic001G249300 Sobic009G226300--Sobic001G249300 Sobic007G187300 Sobic007G187300 Sobic009G226300--Sobic007G187300 Sobic006G030700 Sobic006G030700 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic006G100332 Sobic006G100332 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic003G148800--Sobic006G030700 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900
Octagon: transcription factors


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