Gene annotation
Transcriptome id Sobic.003G388251.1
Synonym -
Functional annotation -
UniProt A0A1W0W0Z8
Pfam PF00445
Panther DB PTHR11240 PTHR11240:SF16
NCBI CDD KOG1642; Ribonuclease, T2 family
KEGG Orthology K01166; ribonuclease T2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G39780 : ribonuclease 2
RAP-DB (Rice) LOC_Os01g67180.1 : ribonuclease T2 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026434
Brachypodium -
Barley -
Wheat TraesCS3B02G430300 , TraesCS3A02G398300 , TraesCS3D02G392300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
2 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
5 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
6 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
7 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
8 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
9 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
10 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
11 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
12 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
14 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
15 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
16 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
17 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
19 Sobic.003G105800 No apical meristem protein, putative, expressed -
20 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase


Gene co-expression network
sample Sobic003G388251 Sobic003G388251 Sobic004G124200 Sobic004G124200 Sobic003G388251--Sobic004G124200 Sobic007G068100 Sobic007G068100 Sobic003G388251--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic003G388251--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic003G388251--Sobic001G474500 Sobic004G101900 Sobic004G101900 Sobic003G388251--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic003G388251--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic003G388251--Sobic009G034700 Sobic009G057300 Sobic009G057300 Sobic003G388251--Sobic009G057300 Sobic001G015500 Sobic001G015500 Sobic003G388251--Sobic001G015500 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic004G124200--Sobic007G068100 Sobic004G124200--Sobic005G178100 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic003G148800 Sobic003G148800 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic004G101900--Sobic002G304000 Sobic002G215700 Sobic002G215700 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic004G101900--Sobic001G015500 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic003G087200 Sobic003G087200 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic005G178100--Sobic001G150600 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200
Octagon: transcription factors


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