Gene annotation
Transcriptome id Sobic.001G305800.2,Sobic.001G305800.1,Sobic.001G305800.3
Synonym Sb01g029780
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
U-box domain containing protein, expressed
UniProt A0A1Z5S8D9 , A0A1Z5S8D2 , C5WTD5
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G45910 : U-box domain-containing protein kinase family protein
RAP-DB (Rice) LOC_Os10g40490.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003271
Brachypodium -
Barley HORVU1Hr1G053230.1 , HORVU1Hr1G053230.2 , HORVU1Hr1G053230.3 , HORVU1Hr1G053230.4 , HORVU1Hr1G053230.6 , HORVU1Hr1G053230.7 , HORVU1Hr1G053230.5
Wheat TraesCS1D02G211100 , TraesCS1D02G211100 , TraesCS1B02G221500 , TraesCS1A02G207800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
2 Sobic.006G030700 receptor kinase, putative, expressed -
3 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
4 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.006G100332 - -
6 Sobic.003G087200 nuclease PA3, putative, expressed -
7 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
9 Sobic.007G092900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
11 Sobic.001G249300 Cf2/Cf5 disease resistance protein, putative, expressed -
12 Sobic.007G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
13 Sobic.004G255000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed -
14 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
15 Sobic.003G388251 - K01166: ribonuclease T2
16 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
18 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
19 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
20 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase


Gene co-expression network
sample Sobic001G305800 Sobic001G305800 Sobic005G178100 Sobic005G178100 Sobic001G305800--Sobic005G178100 Sobic006G030700 Sobic006G030700 Sobic001G305800--Sobic006G030700 Sobic001G150600 Sobic001G150600 Sobic001G305800--Sobic001G150600 Sobic009G161000 Sobic009G161000 Sobic001G305800--Sobic009G161000 Sobic006G100332 Sobic006G100332 Sobic001G305800--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic001G305800--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic001G305800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic001G305800--Sobic009G054500 Sobic007G092900 Sobic007G092900 Sobic001G305800--Sobic007G092900 Sobic005G178100--Sobic009G161000 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic001G015500 Sobic001G015500 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic009G034700 Sobic009G034700 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic005G178100--Sobic001G150600 Sobic007G187300 Sobic007G187300 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic006G030700--Sobic001G249300 Sobic006G030700--Sobic001G150600 Sobic001G280200 Sobic001G280200 Sobic006G030700--Sobic001G280200 Sobic006G030700--Sobic009G054500 Sobic006G030700--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic006G030700--Sobic009G029600 Sobic006G030700--Sobic003G087200 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic008G153400 Sobic008G153400 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G150600--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic001G150600--Sobic004G321800 Sobic009G161000--Sobic005G178100 Sobic004G101900 Sobic004G101900 Sobic009G161000--Sobic004G101900 Sobic009G161000--Sobic001G325200 Sobic009G161000--Sobic006G100332 Sobic009G161000--Sobic003G105800 Sobic004G260000 Sobic004G260000 Sobic009G161000--Sobic004G260000 Sobic009G161000--Sobic009G226300 Sobic009G161000--Sobic001G305800 Sobic004G124200 Sobic004G124200 Sobic009G161000--Sobic004G124200 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic006G091700 Sobic006G091700 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000 Sobic009G054500--Sobic009G226300 Sobic005G018500 Sobic005G018500 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic003G259200 Sobic003G259200 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic009G054500--Sobic006G100332 Sobic002G215700 Sobic002G215700 Sobic009G054500--Sobic002G215700 Sobic007G093000 Sobic007G093000 Sobic007G092900--Sobic007G093000 Sobic007G092900--Sobic009G226300 Sobic007G092900--Sobic001G249300 Sobic007G092900--Sobic006G030700 Sobic007G092900--Sobic009G054500 Sobic007G092900--Sobic007G187300 Sobic007G092900--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic007G092900--Sobic004G320600 Sobic007G092900--Sobic006G100332
Octagon: transcription factors


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