Gene annotation
Transcriptome id Sobic.004G124200.1
Synonym AIM1, Sb04g010370
Functional annotation 3-hydroxyacyl-CoA dehydrogenase, putative, expressed
UniProt C5Y009
Pfam PF16113 PF00725 PF02737
Panther DB PTHR23309 PTHR23309:SF10
NCBI CDD KOG1683; Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase
KEGG Orthology K10527; enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006631fatty acid metabolic process GO:00038573-hydroxyacyl-CoA dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT4G29010 : Enoyl-CoA hydratase/isomerase family
RAP-DB (Rice) LOC_Os02g17390.1 : 3-hydroxyacyl-CoA dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a019806 , Zm00025a019805 , Zm00025a031649 , Zm00025a035224 , Zm00025a023397 , Zm00025a034351 , Zm00025a048274
Brachypodium KQJ94379 , PNT66329
Barley HORVU3Hr1G013880.1 , HORVU3Hr1G013880.3 , HORVU3Hr1G013880.2 , HORVU3Hr1G013880.5 , HORVU3Hr1G013880.4 , HORVU3Hr1G013880.7 , HORVU3Hr1G013880.6 , HORVU6Hr1G024100.4 , HORVU6Hr1G024100.1 , HORVU6Hr1G024100.6 , HORVU6Hr1G024100.5 , HORVU6Hr1G024100.3 , HORVU6Hr1G024100.2
Wheat TraesCS3B02G091200 , TraesCS3B02G091200 , TraesCS3B02G091200 , TraesCS6A02G125800 , TraesCS6A02G125800 , TraesCS6A02G125800 , TraesCS3D02G077200 , TraesCS3D02G077200 , TraesCS6D02G116200 , TraesCS3A02G077000 , TraesCS6B02G153900 , TraesCS6B02G153900 , TraesCS3A02G077000 , TraesCS3A02G077000 , TraesCS3A02G077000 , TraesCS3A02G077000
Populus -


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cDNA sequences
Sobic.004G124200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G388251 - K01166: ribonuclease T2
2 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
3 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
4 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
5 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
8 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
9 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
10 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
11 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
12 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
13 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
14 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
15 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
17 Sobic.001G305800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain containing protein, expressed -
18 Sobic.003G322700 expressed protein -
19 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
20 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G124200 Sobic004G124200 Sobic003G388251 Sobic003G388251 Sobic004G124200--Sobic003G388251 Sobic004G101900 Sobic004G101900 Sobic004G124200--Sobic004G101900 Sobic001G325200 Sobic001G325200 Sobic004G124200--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic007G068100 Sobic007G068100 Sobic004G124200--Sobic007G068100 Sobic005G178100 Sobic005G178100 Sobic004G124200--Sobic005G178100 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic003G388251--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic003G388251--Sobic009G034700 Sobic009G057300 Sobic009G057300 Sobic003G388251--Sobic009G057300 Sobic003G388251--Sobic001G015500 Sobic002G304000 Sobic002G304000 Sobic004G101900--Sobic002G304000 Sobic002G215700 Sobic002G215700 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic003G148800 Sobic003G148800 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic004G101900--Sobic001G015500 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G069900 Sobic001G069900 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G150600 Sobic001G150600 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic009G161000--Sobic005G178100 Sobic009G161000--Sobic004G101900 Sobic009G161000--Sobic001G325200 Sobic006G100332 Sobic006G100332 Sobic009G161000--Sobic006G100332 Sobic003G105800 Sobic003G105800 Sobic009G161000--Sobic003G105800 Sobic004G260000 Sobic004G260000 Sobic009G161000--Sobic004G260000 Sobic009G161000--Sobic009G226300 Sobic001G305800 Sobic001G305800 Sobic009G161000--Sobic001G305800 Sobic009G161000--Sobic004G124200 Sobic009G126900 Sobic009G126900 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic010G043400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic008G153400 Sobic008G153400 Sobic006G199000--Sobic008G153400 Sobic003G398100 Sobic003G398100 Sobic006G199000--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic006G199000--Sobic003G257100 Sobic006G199000--Sobic003G355600 Sobic006G199000--Sobic001G325200 Sobic006G199000--Sobic001G150600 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G199000--Sobic006G091700 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic005G178100--Sobic009G161000 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic005G178100--Sobic001G150600
Octagon: transcription factors


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