Gene annotation
Transcriptome id Sobic.006G028900.1
Synonym Sb06g002990
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed
UniProt C5YD56
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF123
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g10350.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ81456 , KQJ81457
Barley HORVU2Hr1G004200.2 , HORVU2Hr1G004200.4 , HORVU2Hr1G004200.3 , HORVU2Hr1G004200.1 , HORVU0Hr1G040020.1 , HORVU0Hr1G040020.2 , HORVU0Hr1G040020.3 , HORVU2Hr1G004180.1 , HORVU2Hr1G003900.1
Wheat TraesCS3B02G508500 , TraesCS3B02G508500 , TraesCS2D02G027600 , TraesCS2D02G027600 , TraesCS2B02G038500 , TraesCS2A02G026500 , TraesCS2D02G028700 , TraesCS2D02G028700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
2 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
3 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
4 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
5 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
6 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
7 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
8 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
9 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
10 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
11 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
12 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
14 Sobic.001G282600 transporter family protein, putative, expressed -
15 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
17 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
18 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
19 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
20 Sobic.003G087200 nuclease PA3, putative, expressed -


Gene co-expression network
sample Sobic006G028900 Sobic006G028900 Sobic001G325200 Sobic001G325200 Sobic006G028900--Sobic001G325200 Sobic009G034700 Sobic009G034700 Sobic006G028900--Sobic009G034700 Sobic004G124200 Sobic004G124200 Sobic006G028900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic006G028900--Sobic001G015500 Sobic008G153400 Sobic008G153400 Sobic006G028900--Sobic008G153400 Sobic005G178100 Sobic005G178100 Sobic006G028900--Sobic005G178100 Sobic010G205200 Sobic010G205200 Sobic006G028900--Sobic010G205200 Sobic002G266000 Sobic002G266000 Sobic006G028900--Sobic002G266000 Sobic004G101900 Sobic004G101900 Sobic006G028900--Sobic004G101900 Sobic007G068100 Sobic007G068100 Sobic001G325200--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic001G325200--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic009G034700--Sobic005G178100 Sobic003G388251 Sobic003G388251 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic001G474500 Sobic001G474500 Sobic009G034700--Sobic001G474500 Sobic001G069900 Sobic001G069900 Sobic009G034700--Sobic001G069900 Sobic009G034700--Sobic006G028900 Sobic008G079300 Sobic008G079300 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic010G043400 Sobic010G043400 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic004G124200--Sobic007G068100 Sobic004G124200--Sobic005G178100 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic006G091700 Sobic006G091700 Sobic001G015500--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic001G015500--Sobic004G124200 Sobic001G150600 Sobic001G150600 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic006G030700 Sobic006G030700 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic003G398100 Sobic003G398100 Sobic008G153400--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic008G153400--Sobic003G257100 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic002G420700 Sobic002G420700 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic005G178100--Sobic001G150600 Sobic003G428400 Sobic003G428400 Sobic010G205200--Sobic003G428400 Sobic010G205200--Sobic001G069900 Sobic010G205200--Sobic006G028900 Sobic010G112300 Sobic010G112300 Sobic010G205200--Sobic010G112300 Sobic010G205200--Sobic001G015500 Sobic001G301700 Sobic001G301700 Sobic010G205200--Sobic001G301700 Sobic010G205200--Sobic001G474500 Sobic010G205200--Sobic001G325200 Sobic010G205200--Sobic007G186200 Sobic003G322700 Sobic003G322700 Sobic002G266000--Sobic003G322700 Sobic001G282600 Sobic001G282600 Sobic002G266000--Sobic001G282600 Sobic006G104600 Sobic006G104600 Sobic002G266000--Sobic006G104600 Sobic002G249200 Sobic002G249200 Sobic002G266000--Sobic002G249200 Sobic004G261900 Sobic004G261900 Sobic002G266000--Sobic004G261900 Sobic007G004500 Sobic007G004500 Sobic002G266000--Sobic007G004500 Sobic004G034600 Sobic004G034600 Sobic002G266000--Sobic004G034600 Sobic005G149700 Sobic005G149700 Sobic002G266000--Sobic005G149700 Sobic004G225200 Sobic004G225200 Sobic002G266000--Sobic004G225200 Sobic004G101900--Sobic002G304000 Sobic002G215700 Sobic002G215700 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic004G101900--Sobic001G015500
Octagon: transcription factors


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