Gene annotation
Transcriptome id Sobic.003G398100.1,Sobic.003G398100.2
Synonym ATTAP1, TAP1, Sb03g043470
Functional annotation antigen peptide transporter-like 1, chloroplast precursor, putative, expressed
UniProt A0A1B6Q7S7 , A0A1B6Q7S5
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF220
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G70610 : transporter associated with antigen processing protein 1
RAP-DB (Rice) LOC_Os01g68330.1 : antigen peptide transporter-like 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a026328
Brachypodium PNT73435 , KQK11142 , KQK11140 , KQK11141
Barley HORVU3Hr1G092650.30 , HORVU3Hr1G092650.28 , HORVU3Hr1G092650.29 , HORVU3Hr1G092650.26 , HORVU3Hr1G092650.25 , HORVU3Hr1G092650.20 , HORVU3Hr1G092650.19 , HORVU3Hr1G092650.27 , HORVU3Hr1G092650.24 , HORVU3Hr1G092650.22 , HORVU3Hr1G092650.23 , HORVU3Hr1G092650.9 , HORVU3Hr1G092650.8 , HORVU3Hr1G092650.6 , HORVU3Hr1G092650.5 , HORVU3Hr1G092650.4 , HORVU3Hr1G092650.3 , HORVU3Hr1G092650.2 , HORVU3Hr1G092650.1 , HORVU3Hr1G092650.17 , HORVU3Hr1G092650.16 , HORVU3Hr1G092650.12 , HORVU3Hr1G092650.11 , HORVU3Hr1G092650.10 , HORVU3Hr1G092650.18
Wheat TraesCS3B02G452000 , TraesCS3A02G417100 , TraesCS3D02G412600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
2 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
3 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
4 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
5 Sobic.003G257100 YT521-B-like family domain containing protein, expressed -
6 Sobic.001G496100 - -
7 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.003G322700 expressed protein -
9 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
10 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
11 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
12 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
13 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
14 Sobic.001G282600 transporter family protein, putative, expressed -
15 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
16 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.001G305500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G087200 nuclease PA3, putative, expressed -
20 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G398100 Sobic003G398100 Sobic006G199000 Sobic006G199000 Sobic003G398100--Sobic006G199000 Sobic008G153400 Sobic008G153400 Sobic003G398100--Sobic008G153400 Sobic009G207600 Sobic009G207600 Sobic003G398100--Sobic009G207600 Sobic001G504900 Sobic001G504900 Sobic003G398100--Sobic001G504900 Sobic003G257100 Sobic003G257100 Sobic003G398100--Sobic003G257100 Sobic001G496100 Sobic001G496100 Sobic003G398100--Sobic001G496100 Sobic003G355600 Sobic003G355600 Sobic003G398100--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic003G398100--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic003G398100--Sobic001G150600 Sobic006G199000--Sobic008G153400 Sobic006G199000--Sobic003G398100 Sobic006G199000--Sobic003G257100 Sobic006G199000--Sobic003G355600 Sobic001G325200 Sobic001G325200 Sobic006G199000--Sobic001G325200 Sobic006G199000--Sobic001G150600 Sobic001G015500 Sobic001G015500 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G091700 Sobic006G091700 Sobic006G199000--Sobic006G091700 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic006G030700 Sobic006G030700 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic008G153400--Sobic003G398100 Sobic008G153400--Sobic003G257100 Sobic003G087200 Sobic003G087200 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic009G226300 Sobic009G226300 Sobic008G153400--Sobic009G226300 Sobic009G207600--Sobic001G504900 Sobic009G207600--Sobic003G398100 Sobic002G338100 Sobic002G338100 Sobic009G207600--Sobic002G338100 Sobic008G079300 Sobic008G079300 Sobic009G207600--Sobic008G079300 Sobic001G474500 Sobic001G474500 Sobic009G207600--Sobic001G474500 Sobic009G207600--Sobic008G153400 Sobic009G207600--Sobic001G496100 Sobic009G207600--Sobic006G091700 Sobic009G207600--Sobic003G087200 Sobic001G504900--Sobic009G207600 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic001G504900--Sobic002G338100 Sobic001G069900 Sobic001G069900 Sobic001G504900--Sobic001G069900 Sobic006G181300 Sobic006G181300 Sobic001G504900--Sobic006G181300 Sobic001G504900--Sobic001G015500 Sobic009G029600 Sobic009G029600 Sobic003G257100--Sobic009G029600 Sobic003G257100--Sobic006G199000 Sobic003G257100--Sobic008G153400 Sobic003G257100--Sobic003G398100 Sobic010G107000 Sobic010G107000 Sobic003G257100--Sobic010G107000 Sobic002G352800 Sobic002G352800 Sobic003G257100--Sobic002G352800 Sobic009G211400 Sobic009G211400 Sobic003G257100--Sobic009G211400 Sobic003G257100--Sobic006G030700 Sobic002G409500 Sobic002G409500 Sobic003G257100--Sobic002G409500 Sobic001G496100--Sobic003G398100 Sobic001G496100--Sobic009G207600 Sobic009G011600 Sobic009G011600 Sobic001G496100--Sobic009G011600 Sobic009G006400 Sobic009G006400 Sobic001G496100--Sobic009G006400 Sobic001G496100--Sobic006G199000 Sobic004G225200 Sobic004G225200 Sobic001G496100--Sobic004G225200 Sobic001G496100--Sobic002G266000 Sobic001G496100--Sobic005G149700 Sobic001G496100--Sobic008G153400 Sobic008G062200 Sobic008G062200 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G355600--Sobic002G304000 Sobic003G355600--Sobic009G226300 Sobic003G355600--Sobic010G107000 Sobic003G355600--Sobic006G199000 Sobic002G009700 Sobic002G009700 Sobic003G355600--Sobic002G009700 Sobic009G193700 Sobic009G193700 Sobic003G355600--Sobic009G193700 Sobic004G101900 Sobic004G101900 Sobic003G355600--Sobic004G101900 Sobic003G322700--Sobic002G266000 Sobic006G204900 Sobic006G204900 Sobic003G322700--Sobic006G204900 Sobic010G001500 Sobic010G001500 Sobic003G322700--Sobic010G001500 Sobic004G355000 Sobic004G355000 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G322700--Sobic003G355600 Sobic006G087700 Sobic006G087700 Sobic003G322700--Sobic006G087700 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600 Sobic001G150600--Sobic003G087200 Sobic006G100332 Sobic006G100332 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic009G054500 Sobic009G054500 Sobic001G150600--Sobic009G054500 Sobic004G321800 Sobic004G321800 Sobic001G150600--Sobic004G321800
Octagon: transcription factors


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