Gene annotation
Transcriptome id Sobic.001G504900.1
Synonym ACD1, Sb01g047120, LLS1, PAO
Functional annotation pheophorbide a oxygenase, chloroplast precursor, putative, expressed
UniProt C5WXY7
Pfam PF00355 PF08417
Panther DB PTHR21266 PTHR21266:SF24
NCBI CDD -
KEGG Orthology K13071; PAO, pheophorbide a oxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0010277chlorophyllide a oxygenase [overall] activity


Orthologs (automatic annotation)
TAIR AT3G44880 : Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
RAP-DB (Rice) LOC_Os03g05310.1 : pheophorbide a oxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a000622 , Zm00025a051050
Brachypodium KQK23665
Barley HORVU4Hr1G079260.2 , HORVU4Hr1G079260.3 , HORVU4Hr1G079260.1 , HORVU4Hr1G079260.4 , HORVU4Hr1G079330.1 , HORVU4Hr1G079330.2 , HORVU4Hr1G079330.3 , HORVU4Hr1G079330.4 , HORVU4Hr1G079330.5 , HORVU4Hr1G079330.6
Wheat TraesCS4A02G411000 , TraesCS4D02G309000 , TraesCS4B02G311100
Populus -


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cDNA sequences
Sobic.001G504900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
2 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
3 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
4 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
6 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
7 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
9 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
10 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
11 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
12 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
13 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
14 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
15 Sobic.001G282600 transporter family protein, putative, expressed -
16 Sobic.004G034600 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
18 Sobic.001G496100 - -
19 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.003G087200 nuclease PA3, putative, expressed -


Gene co-expression network
sample Sobic001G504900 Sobic001G504900 Sobic009G207600 Sobic009G207600 Sobic001G504900--Sobic009G207600 Sobic003G398100 Sobic003G398100 Sobic001G504900--Sobic003G398100 Sobic004G261900 Sobic004G261900 Sobic001G504900--Sobic004G261900 Sobic005G149700 Sobic005G149700 Sobic001G504900--Sobic005G149700 Sobic002G266000 Sobic002G266000 Sobic001G504900--Sobic002G266000 Sobic002G338100 Sobic002G338100 Sobic001G504900--Sobic002G338100 Sobic001G069900 Sobic001G069900 Sobic001G504900--Sobic001G069900 Sobic006G181300 Sobic006G181300 Sobic001G504900--Sobic006G181300 Sobic001G015500 Sobic001G015500 Sobic001G504900--Sobic001G015500 Sobic009G207600--Sobic001G504900 Sobic009G207600--Sobic003G398100 Sobic009G207600--Sobic002G338100 Sobic008G079300 Sobic008G079300 Sobic009G207600--Sobic008G079300 Sobic001G474500 Sobic001G474500 Sobic009G207600--Sobic001G474500 Sobic008G153400 Sobic008G153400 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic006G091700 Sobic006G091700 Sobic009G207600--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic009G207600--Sobic003G087200 Sobic006G199000 Sobic006G199000 Sobic003G398100--Sobic006G199000 Sobic003G398100--Sobic008G153400 Sobic003G398100--Sobic009G207600 Sobic003G398100--Sobic001G504900 Sobic003G257100 Sobic003G257100 Sobic003G398100--Sobic003G257100 Sobic003G398100--Sobic001G496100 Sobic003G355600 Sobic003G355600 Sobic003G398100--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic003G398100--Sobic003G322700 Sobic001G150600 Sobic001G150600 Sobic003G398100--Sobic001G150600 Sobic004G261900--Sobic001G504900 Sobic004G261900--Sobic002G266000 Sobic004G034600 Sobic004G034600 Sobic004G261900--Sobic004G034600 Sobic004G261900--Sobic003G322700 Sobic004G261900--Sobic003G398100 Sobic004G225200 Sobic004G225200 Sobic004G261900--Sobic004G225200 Sobic004G261900--Sobic005G149700 Sobic004G261900--Sobic009G207600 Sobic001G517800 Sobic001G517800 Sobic004G261900--Sobic001G517800 Sobic005G149700--Sobic004G034600 Sobic005G149700--Sobic001G504900 Sobic005G149700--Sobic002G266000 Sobic002G128200 Sobic002G128200 Sobic005G149700--Sobic002G128200 Sobic006G104600 Sobic006G104600 Sobic005G149700--Sobic006G104600 Sobic009G011600 Sobic009G011600 Sobic005G149700--Sobic009G011600 Sobic005G149700--Sobic009G207600 Sobic003G174301 Sobic003G174301 Sobic005G149700--Sobic003G174301 Sobic005G149700--Sobic003G398100 Sobic002G266000--Sobic003G322700 Sobic001G282600 Sobic001G282600 Sobic002G266000--Sobic001G282600 Sobic002G266000--Sobic006G104600 Sobic002G249200 Sobic002G249200 Sobic002G266000--Sobic002G249200 Sobic002G266000--Sobic004G261900 Sobic007G004500 Sobic007G004500 Sobic002G266000--Sobic007G004500 Sobic002G266000--Sobic004G034600 Sobic002G266000--Sobic005G149700 Sobic002G266000--Sobic004G225200 Sobic002G338100--Sobic009G207600 Sobic002G338100--Sobic001G504900 Sobic002G338100--Sobic003G398100 Sobic001G176600 Sobic001G176600 Sobic002G338100--Sobic001G176600 Sobic002G338100--Sobic008G153400 Sobic002G338100--Sobic001G474500 Sobic002G338100--Sobic006G091700 Sobic009G034700 Sobic009G034700 Sobic002G338100--Sobic009G034700 Sobic002G338100--Sobic006G181300 Sobic001G069900--Sobic001G015500 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic005G178100 Sobic005G178100 Sobic001G069900--Sobic005G178100 Sobic001G069900--Sobic009G034700 Sobic001G325200 Sobic001G325200 Sobic001G069900--Sobic001G325200 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic004G321800 Sobic004G321800 Sobic006G181300--Sobic004G321800 Sobic006G181300--Sobic009G207600 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200
Octagon: transcription factors


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