Gene annotation
Transcriptome id Sobic.006G091700.1
Synonym Sb06g017680, OPR1, ATOPR1
Functional annotation 12-oxophytodienoate reductase, putative, expressed
UniProt A0A1B6PL26
Pfam PF00724
Panther DB PTHR22893 PTHR22893:SF44
NCBI CDD KOG0134; NADH:flavin oxidoreductase/12-oxophytodienoate reductase
KEGG Orthology K05894; 12-oxophytodienoic acid reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0010181FMN binding


Orthologs (automatic annotation)
TAIR AT1G76680 : 12-oxophytodienoate reductase 1
RAP-DB (Rice) LOC_Os06g11240.1 : 12-oxophytodienoate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a011265
Brachypodium KQJ82832
Barley HORVU2Hr1G077220.18 , HORVU2Hr1G077220.19 , HORVU2Hr1G077220.10 , HORVU2Hr1G077220.13 , HORVU2Hr1G077220.14 , HORVU2Hr1G077220.15 , HORVU2Hr1G077220.16 , HORVU2Hr1G077220.17 , HORVU2Hr1G077220.29 , HORVU2Hr1G077220.28 , HORVU2Hr1G077220.25 , HORVU2Hr1G077220.24 , HORVU2Hr1G077220.27 , HORVU2Hr1G077220.26 , HORVU2Hr1G077220.21 , HORVU2Hr1G077220.20 , HORVU2Hr1G077220.23 , HORVU2Hr1G077220.22 , HORVU2Hr1G077220.8 , HORVU2Hr1G077220.9 , HORVU2Hr1G077220.2 , HORVU2Hr1G077220.3 , HORVU2Hr1G077220.1 , HORVU2Hr1G077220.6 , HORVU2Hr1G077220.7 , HORVU2Hr1G077220.4 , HORVU2Hr1G077220.5 , HORVU2Hr1G077220.11 , HORVU2Hr1G077220.12 , HORVU2Hr1G077220.32 , HORVU2Hr1G077220.30 , HORVU2Hr1G077220.31
Wheat TraesCS2A02G311200 , TraesCS6D02G302300 , TraesCS6D02G302300 , TraesCS2A02G311200 , TraesCS2A02G311200 , TraesCS2D02G309400 , TraesCS2D02G309400 , TraesCS2D02G309400 , TraesCS2D02G309400 , TraesCS6B02G353200 , TraesCS6B02G353200 , TraesCS2B02G328100 , TraesCS6B02G464800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G091700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
2 Sobic.003G087200 nuclease PA3, putative, expressed -
3 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
4 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
5 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
6 Sobic.008G153400 peptidase, putative, expressed K18151: ureidoglycolate amidohydrolase
7 Sobic.006G030700 receptor kinase, putative, expressed -
8 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
9 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
10 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
11 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
12 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
13 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
14 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
15 Sobic.003G398100 antigen peptide transporter-like 1, chloroplast precursor, putative, expressed -
16 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
17 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
18 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.006G100332 - -
20 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G091700 Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic006G091700--Sobic009G114000 Sobic003G087200 Sobic003G087200 Sobic006G091700--Sobic003G087200 Sobic001G150600 Sobic001G150600 Sobic006G091700--Sobic001G150600 Sobic002G085300 Sobic002G085300 Sobic006G091700--Sobic002G085300 Sobic001G015500 Sobic001G015500 Sobic006G091700--Sobic001G015500 Sobic008G153400 Sobic008G153400 Sobic006G091700--Sobic008G153400 Sobic006G030700 Sobic006G030700 Sobic006G091700--Sobic006G030700 Sobic006G199000 Sobic006G199000 Sobic006G091700--Sobic006G199000 Sobic001G069900 Sobic001G069900 Sobic006G091700--Sobic001G069900 Sobic009G114000--Sobic006G091700 Sobic009G114000--Sobic003G087200 Sobic006G226400 Sobic006G226400 Sobic009G114000--Sobic006G226400 Sobic006G181300 Sobic006G181300 Sobic009G114000--Sobic006G181300 Sobic009G114000--Sobic002G085300 Sobic009G114000--Sobic001G150600 Sobic009G114000--Sobic001G069900 Sobic002G122800 Sobic002G122800 Sobic009G114000--Sobic002G122800 Sobic009G114000--Sobic006G030700 Sobic003G087200--Sobic001G150600 Sobic006G100332 Sobic006G100332 Sobic003G087200--Sobic006G100332 Sobic004G321800 Sobic004G321800 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic009G226300 Sobic009G226300 Sobic003G087200--Sobic009G226300 Sobic003G087200--Sobic006G091700 Sobic003G148800 Sobic003G148800 Sobic003G087200--Sobic003G148800 Sobic003G087200--Sobic008G153400 Sobic003G087200--Sobic009G114000 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic001G150600--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic001G150600--Sobic001G325200 Sobic009G054500 Sobic009G054500 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800 Sobic002G085300--Sobic006G091700 Sobic002G085300--Sobic009G114000 Sobic002G420700 Sobic002G420700 Sobic002G085300--Sobic002G420700 Sobic002G085300--Sobic003G087200 Sobic002G085300--Sobic001G015500 Sobic002G085300--Sobic001G150600 Sobic002G085300--Sobic008G153400 Sobic002G085300--Sobic001G069900 Sobic001G150650 Sobic001G150650 Sobic002G085300--Sobic001G150650 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic001G015500--Sobic004G101900 Sobic005G178100 Sobic005G178100 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic008G153400--Sobic001G150600 Sobic008G153400--Sobic006G199000 Sobic008G153400--Sobic006G030700 Sobic008G153400--Sobic001G325200 Sobic003G398100 Sobic003G398100 Sobic008G153400--Sobic003G398100 Sobic003G257100 Sobic003G257100 Sobic008G153400--Sobic003G257100 Sobic008G153400--Sobic003G087200 Sobic008G153400--Sobic006G091700 Sobic008G153400--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic006G030700--Sobic007G187300 Sobic006G030700--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic006G030700--Sobic001G249300 Sobic006G030700--Sobic001G150600 Sobic001G280200 Sobic001G280200 Sobic006G030700--Sobic001G280200 Sobic006G030700--Sobic009G054500 Sobic006G030700--Sobic006G100332 Sobic009G029600 Sobic009G029600 Sobic006G030700--Sobic009G029600 Sobic006G030700--Sobic003G087200 Sobic006G199000--Sobic008G153400 Sobic006G199000--Sobic003G398100 Sobic006G199000--Sobic003G257100 Sobic003G355600 Sobic003G355600 Sobic006G199000--Sobic003G355600 Sobic006G199000--Sobic001G325200 Sobic006G199000--Sobic001G150600 Sobic006G199000--Sobic001G015500 Sobic001G282600 Sobic001G282600 Sobic006G199000--Sobic001G282600 Sobic006G199000--Sobic006G091700 Sobic001G069900--Sobic001G015500 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic001G069900--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.