Gene annotation
Transcriptome id Sobic.006G181300.1
Synonym Polyphenol oxidase (PPO) 1, Sb06g025570, Sb06PPO1;Polyphenol oxidase (PPO) 1, Sb06PPO1
Functional annotation Polyphenol oxidas (PubMedID : 28818380)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
polyphenol oxidase, putative, expressed
UniProt A0A023PN01 , A0A023PNV8 , A0A023PP81 , A0A023PMD2 , C5YE18
Pfam PF12142 PF00264 PF12143
Panther DB PTHR11474 PTHR11474:SF36
NCBI CDD -
KEGG Orthology K00422; polyphenol oxidase
Gene Ontology GO:0004097; catechol oxidase activity GO:0016491oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g53300.1 : polyphenol oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a056786 , Zm00025a057062
Brachypodium PNT61885 , KQK10142
Barley HORVU2Hr1G103000.6 , HORVU2Hr1G103000.7 , HORVU2Hr1G103000.4 , HORVU2Hr1G103000.5 , HORVU2Hr1G103000.2 , HORVU2Hr1G103000.3 , HORVU2Hr1G103000.1 , HORVU3Hr1G077790.1 , HORVU2Hr1G103000.8 , HORVU2Hr1G103000.9 , HORVU0Hr1G007090.1 , HORVU2Hr1G102950.1 , HORVU2Hr1G103040.2 , HORVU2Hr1G103040.3 , HORVU2Hr1G103040.1 , HORVU2Hr1G103040.4 , HORVU2Hr1G103040.5 , HORVU5Hr1G041740.2 , HORVU5Hr1G041740.1
Wheat TraesCS2B02G491100 , TraesCS2D02G468200 , TraesCS2A02G468200 , TraesCS2A02G468500 , TraesCS2B02G491400 , TraesCS2B02G491000 , TraesCS2D02G468600
Populus -


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cDNA sequences
Sobic.006G181300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
2 Sobic.003G087200 nuclease PA3, putative, expressed -
3 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
4 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
5 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
6 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
7 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
8 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
10 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
11 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
12 Sobic.006G100332 - -
13 Sobic.001G359500 cytochrome P450, putative, expressed -
14 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
15 Sobic.003G105800 No apical meristem protein, putative, expressed -
16 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
17 Sobic.002G338100 THYLAKOID FORMATION1, chloroplast precursor, putative, expressed -
18 Sobic.006G226400 leucoanthocyanidin reductase, putative, expressed -
19 Sobic.006G030700 receptor kinase, putative, expressed -
20 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2


Gene co-expression network
sample Sobic006G181300 Sobic006G181300 Sobic001G069900 Sobic001G069900 Sobic006G181300--Sobic001G069900 Sobic003G087200 Sobic003G087200 Sobic006G181300--Sobic003G087200 Sobic009G114000 Sobic009G114000 Sobic006G181300--Sobic009G114000 Sobic006G091700 Sobic006G091700 Sobic006G181300--Sobic006G091700 Sobic004G321800 Sobic004G321800 Sobic006G181300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic006G181300--Sobic009G207600 Sobic001G015500 Sobic001G015500 Sobic006G181300--Sobic001G015500 Sobic008G079300 Sobic008G079300 Sobic006G181300--Sobic008G079300 Sobic001G150600 Sobic001G150600 Sobic006G181300--Sobic001G150600 Sobic001G069900--Sobic001G015500 Sobic001G069900--Sobic006G181300 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic001G069900--Sobic009G114000 Sobic001G069900--Sobic001G150600 Sobic005G178100 Sobic005G178100 Sobic001G069900--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic001G069900--Sobic009G034700 Sobic001G325200 Sobic001G325200 Sobic001G069900--Sobic001G325200 Sobic003G087200--Sobic001G150600 Sobic006G100332 Sobic006G100332 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic006G030700 Sobic006G030700 Sobic003G087200--Sobic006G030700 Sobic009G226300 Sobic009G226300 Sobic003G087200--Sobic009G226300 Sobic003G087200--Sobic006G091700 Sobic003G148800 Sobic003G148800 Sobic003G087200--Sobic003G148800 Sobic008G153400 Sobic008G153400 Sobic003G087200--Sobic008G153400 Sobic003G087200--Sobic009G114000 Sobic009G114000--Sobic006G091700 Sobic009G114000--Sobic003G087200 Sobic006G226400 Sobic006G226400 Sobic009G114000--Sobic006G226400 Sobic009G114000--Sobic006G181300 Sobic002G085300 Sobic002G085300 Sobic009G114000--Sobic002G085300 Sobic009G114000--Sobic001G150600 Sobic009G114000--Sobic001G069900 Sobic002G122800 Sobic002G122800 Sobic009G114000--Sobic002G122800 Sobic009G114000--Sobic006G030700 Sobic006G091700--Sobic009G114000 Sobic006G091700--Sobic003G087200 Sobic006G091700--Sobic001G150600 Sobic006G091700--Sobic002G085300 Sobic006G091700--Sobic001G015500 Sobic006G091700--Sobic008G153400 Sobic006G091700--Sobic006G030700 Sobic006G199000 Sobic006G199000 Sobic006G091700--Sobic006G199000 Sobic006G091700--Sobic001G069900 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic004G321800--Sobic001G325200 Sobic003G105800 Sobic003G105800 Sobic004G321800--Sobic003G105800 Sobic003G184900 Sobic003G184900 Sobic004G321800--Sobic003G184900 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic001G504900 Sobic001G504900 Sobic009G207600--Sobic001G504900 Sobic003G398100 Sobic003G398100 Sobic009G207600--Sobic003G398100 Sobic002G338100 Sobic002G338100 Sobic009G207600--Sobic002G338100 Sobic009G207600--Sobic008G079300 Sobic001G474500 Sobic001G474500 Sobic009G207600--Sobic001G474500 Sobic009G207600--Sobic008G153400 Sobic001G496100 Sobic001G496100 Sobic009G207600--Sobic001G496100 Sobic009G207600--Sobic006G091700 Sobic009G207600--Sobic003G087200 Sobic001G015500--Sobic001G069900 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic001G015500--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic007G225900 Sobic007G225900 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic009G054500 Sobic009G054500 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800
Octagon: transcription factors


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