Gene annotation
Transcriptome id Sobic.004G321800.1,Sobic.004G321800.2
Synonym LKR, SDH, Sb04g035220, LKR/SDH
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
saccharopine dehydrogenase, putative, expressed
UniProt C5XTQ3
Pfam PF03435 PF04455 PF05222 PF16653
Panther DB PTHR11133 PTHR11133:SF14
NCBI CDD KOG0172; Lysine-ketoglutarate reductase/saccharopine dehydrogenase
KEGG Orthology K14157; alpha-aminoadipic semialdehyde synthase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G33150 : lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme
RAP-DB (Rice) LOC_Os02g54254.1 : saccharopine dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a032999
Brachypodium KQK02069
Barley HORVU6Hr1G083050.36 , HORVU6Hr1G083050.37 , HORVU6Hr1G083050.34 , HORVU6Hr1G083050.35 , HORVU6Hr1G083050.32 , HORVU6Hr1G083050.33 , HORVU6Hr1G083050.30 , HORVU6Hr1G083050.31 , HORVU6Hr1G083050.38 , HORVU6Hr1G083050.39 , HORVU6Hr1G083050.18 , HORVU6Hr1G083050.19 , HORVU6Hr1G083050.14 , HORVU6Hr1G083050.15 , HORVU6Hr1G083050.16 , HORVU6Hr1G083050.17 , HORVU6Hr1G083050.10 , HORVU6Hr1G083050.11 , HORVU6Hr1G083050.12 , HORVU6Hr1G083050.13 , HORVU6Hr1G083050.21 , HORVU6Hr1G083050.20 , HORVU6Hr1G083050.23 , HORVU6Hr1G083050.22 , HORVU6Hr1G083050.25 , HORVU6Hr1G083050.24 , HORVU6Hr1G083050.27 , HORVU6Hr1G083050.26 , HORVU6Hr1G083050.29 , HORVU6Hr1G083050.28 , HORVU6Hr1G083050.6 , HORVU6Hr1G083050.7 , HORVU6Hr1G083050.4 , HORVU6Hr1G083050.5 , HORVU6Hr1G083050.2 , HORVU6Hr1G083050.3 , HORVU6Hr1G083050.1 , HORVU6Hr1G083050.8 , HORVU6Hr1G083050.9 , HORVU6Hr1G083050.42 , HORVU6Hr1G083050.41 , HORVU6Hr1G083050.40
Wheat TraesCS6B02G376200 , TraesCS6B02G376200 , TraesCS2D02G174700 , TraesCS2D02G174700 , TraesCS6A02G344000 , TraesCS6A02G344000 , TraesCS6A02G344000 , TraesCS6A02G344000 , TraesCS2D02G174700 , TraesCS6B02G376200 , TraesCS6D02G325100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G100332 - -
2 Sobic.003G087200 nuclease PA3, putative, expressed -
3 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
4 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
6 Sobic.003G105800 No apical meristem protein, putative, expressed -
7 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
8 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
9 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
10 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.006G030700 receptor kinase, putative, expressed -
12 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
13 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
14 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
15 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
16 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
17 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
18 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
19 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
20 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic004G321800 Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic004G321800--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic004G321800--Sobic003G087200 Sobic003G148800 Sobic003G148800 Sobic004G321800--Sobic003G148800 Sobic009G226300 Sobic009G226300 Sobic004G321800--Sobic009G226300 Sobic001G325200 Sobic001G325200 Sobic004G321800--Sobic001G325200 Sobic003G105800 Sobic003G105800 Sobic004G321800--Sobic003G105800 Sobic003G184900 Sobic003G184900 Sobic004G321800--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic007G187300 Sobic007G187300 Sobic006G100332--Sobic007G187300 Sobic006G030700 Sobic006G030700 Sobic006G100332--Sobic006G030700 Sobic001G249300 Sobic001G249300 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic003G087200--Sobic001G150600 Sobic003G087200--Sobic006G100332 Sobic003G087200--Sobic004G321800 Sobic003G087200--Sobic006G030700 Sobic003G087200--Sobic009G226300 Sobic006G091700 Sobic006G091700 Sobic003G087200--Sobic006G091700 Sobic003G087200--Sobic003G148800 Sobic008G153400 Sobic008G153400 Sobic003G087200--Sobic008G153400 Sobic009G114000 Sobic009G114000 Sobic003G087200--Sobic009G114000 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic002G304000 Sobic002G304000 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic003G148800--Sobic006G030700 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic004G260000 Sobic004G260000 Sobic009G226300--Sobic004G260000 Sobic007G068100 Sobic007G068100 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic001G325200--Sobic004G101900 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G015500 Sobic001G015500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic003G105800--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic003G105800--Sobic008G079300 Sobic003G105800--Sobic004G321800 Sobic003G105800--Sobic001G325200 Sobic003G105800--Sobic002G304000 Sobic007G225900 Sobic007G225900 Sobic003G105800--Sobic007G225900 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic003G105800--Sobic009G226300 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic003G184900--Sobic006G100332 Sobic003G184900--Sobic007G225900 Sobic002G324000 Sobic002G324000 Sobic003G184900--Sobic002G324000 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500 Sobic001G150600--Sobic003G087200 Sobic001G150600--Sobic006G100332 Sobic001G150600--Sobic008G153400 Sobic001G150600--Sobic006G030700 Sobic001G150600--Sobic009G226300 Sobic001G150600--Sobic003G148800 Sobic001G150600--Sobic001G325200 Sobic001G150600--Sobic009G054500 Sobic001G150600--Sobic004G321800 Sobic006G226400 Sobic006G226400 Sobic004G320600--Sobic006G226400 Sobic004G320600--Sobic004G321800 Sobic004G320600--Sobic003G087200 Sobic007G092900 Sobic007G092900 Sobic004G320600--Sobic007G092900 Sobic004G320600--Sobic006G100332 Sobic007G093000 Sobic007G093000 Sobic004G320600--Sobic007G093000 Sobic004G320600--Sobic007G187300 Sobic004G320600--Sobic009G226300 Sobic004G320600--Sobic005G178100
Octagon: transcription factors


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