Gene annotation
Transcriptome id Sobic.007G219900.1
Synonym Sb07g028620, SIP1, AtSIP1
Functional annotation uncharacterized glycosyltransferase, putative, expressed
UniProt C5YJB3
Pfam PF05691
Panther DB PTHR31268 PTHR31268:SF4
NCBI CDD -
KEGG Orthology K06617; raffinose synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55740 : seed imbibition 1
RAP-DB (Rice) LOC_Os08g38710.1 : uncharacterized glycosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a004984 , Zm00025a004986
Brachypodium PNT68342 , KQJ98802
Barley -
Wheat TraesCS7A02G236500 , TraesCS7B02G134600 , TraesCS7D02G236700
Populus PNT28508


JBrowse

Open New Page


cDNA sequences
Sobic.007G219900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
2 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
3 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
4 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
5 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
6 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
8 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
9 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
11 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
12 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
13 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
14 Sobic.006G100332 - -
15 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
16 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
17 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
19 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
20 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase


Gene co-expression network
sample Sobic007G219900 Sobic007G219900 Sobic006G127100 Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic003G366400 Sobic003G366400 Sobic007G219900--Sobic003G366400 Sobic009G054500 Sobic009G054500 Sobic007G219900--Sobic009G054500 Sobic003G148800 Sobic003G148800 Sobic007G219900--Sobic003G148800 Sobic004G260000 Sobic004G260000 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic006G127100--Sobic007G219900 Sobic002G113300 Sobic002G113300 Sobic006G127100--Sobic002G113300 Sobic004G345800 Sobic004G345800 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic004G321800 Sobic004G321800 Sobic006G127100--Sobic004G321800 Sobic006G127100--Sobic003G148800 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic006G127100--Sobic003G184900 Sobic005G018500--Sobic009G054500 Sobic005G018500--Sobic004G260000 Sobic004G255000 Sobic004G255000 Sobic005G018500--Sobic004G255000 Sobic003G259200 Sobic003G259200 Sobic005G018500--Sobic003G259200 Sobic005G018500--Sobic009G226300 Sobic001G249300 Sobic001G249300 Sobic005G018500--Sobic001G249300 Sobic005G018500--Sobic003G148800 Sobic003G219600 Sobic003G219600 Sobic005G018500--Sobic003G219600 Sobic007G187300 Sobic007G187300 Sobic005G018500--Sobic007G187300 Sobic003G366400--Sobic007G219900 Sobic003G401200 Sobic003G401200 Sobic003G366400--Sobic003G401200 Sobic003G366400--Sobic002G215700 Sobic003G366400--Sobic004G260000 Sobic003G366400--Sobic001G227800 Sobic004G246200 Sobic004G246200 Sobic003G366400--Sobic004G246200 Sobic003G366400--Sobic005G018500 Sobic004G101900 Sobic004G101900 Sobic003G366400--Sobic004G101900 Sobic009G211400 Sobic009G211400 Sobic003G366400--Sobic009G211400 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic006G100332 Sobic006G100332 Sobic009G054500--Sobic006G100332 Sobic009G054500--Sobic002G215700 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic001G325200 Sobic001G325200 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic002G304000 Sobic002G304000 Sobic003G148800--Sobic002G304000 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic008G062200 Sobic008G062200 Sobic004G260000--Sobic008G062200 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic002G215700--Sobic003G138200 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500 Sobic009G226300--Sobic009G054500 Sobic009G226300--Sobic001G249300 Sobic009G226300--Sobic007G187300 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000 Sobic001G227800--Sobic002G215700 Sobic001G227800--Sobic009G226300 Sobic001G227800--Sobic009G054500 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic001G227800--Sobic002G304000 Sobic001G227800--Sobic005G018500 Sobic001G227800--Sobic006G100332 Sobic001G227800--Sobic003G219600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.