Gene annotation
Transcriptome id Sobic.006G127100.2,Sobic.006G127100.1
Synonym MLS, Sb06g020720
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
malate synthase, glyoxysomal, putative, expressed
UniProt A0A1B6PLP6 , A0A1Z5REE6
Pfam PF01274
Panther DB PTHR21631 PTHR21631:SF1
NCBI CDD -
KEGG Orthology K01638; aceB, malate synthase
Gene Ontology GO:0006097; glyoxylate cycle GO:0004474malate synthase activity


Orthologs (automatic annotation)
TAIR AT5G03860 : malate synthase
RAP-DB (Rice) LOC_Os04g40990.1 : malate synthase, glyoxysomal, putative, expressed
MaizeGDB (Corn) Zm00025a010945
Brachypodium KQJ83251
Barley HORVU2Hr1G084130.4 , HORVU2Hr1G084130.5 , HORVU2Hr1G084130.6 , HORVU2Hr1G084130.1 , HORVU2Hr1G084130.2 , HORVU2Hr1G084130.3
Wheat TraesCS2B02G364000 , TraesCS2A02G345500 , TraesCS2D02G344200
Populus -


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cDNA sequences
Sobic.006G127100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
2 Sobic.002G113300 expressed protein -
3 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
4 Sobic.004G333200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
5 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
6 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
7 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
8 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
9 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
10 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
11 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
12 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
14 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
15 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
16 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
17 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
18 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
20 Sobic.003G105800 No apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic006G127100 Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic006G127100--Sobic007G219900 Sobic002G113300 Sobic002G113300 Sobic006G127100--Sobic002G113300 Sobic004G345800 Sobic004G345800 Sobic006G127100--Sobic004G345800 Sobic004G333200 Sobic004G333200 Sobic006G127100--Sobic004G333200 Sobic004G321800 Sobic004G321800 Sobic006G127100--Sobic004G321800 Sobic003G148800 Sobic003G148800 Sobic006G127100--Sobic003G148800 Sobic003G366400 Sobic003G366400 Sobic006G127100--Sobic003G366400 Sobic002G324000 Sobic002G324000 Sobic006G127100--Sobic002G324000 Sobic003G184900 Sobic003G184900 Sobic006G127100--Sobic003G184900 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic007G219900--Sobic003G366400 Sobic009G054500 Sobic009G054500 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic004G260000 Sobic004G260000 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic002G113300--Sobic006G127100 Sobic002G113300--Sobic007G219900 Sobic001G156100 Sobic001G156100 Sobic002G113300--Sobic001G156100 Sobic003G009100 Sobic003G009100 Sobic002G113300--Sobic003G009100 Sobic001G373100 Sobic001G373100 Sobic002G113300--Sobic001G373100 Sobic002G113300--Sobic004G345800 Sobic008G021800 Sobic008G021800 Sobic002G113300--Sobic008G021800 Sobic001G447500 Sobic001G447500 Sobic002G113300--Sobic001G447500 Sobic003G241000 Sobic003G241000 Sobic002G113300--Sobic003G241000 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic004G345800--Sobic001G474500 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic008G079300 Sobic008G079300 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800 Sobic003G061400 Sobic003G061400 Sobic004G333200--Sobic003G061400 Sobic005G178100 Sobic005G178100 Sobic004G333200--Sobic005G178100 Sobic001G305800 Sobic001G305800 Sobic004G333200--Sobic001G305800 Sobic004G333200--Sobic007G219900 Sobic004G333200--Sobic006G127100 Sobic004G333200--Sobic004G345800 Sobic004G333200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic004G333200--Sobic004G101900 Sobic004G333200--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic004G321800--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic001G325200 Sobic001G325200 Sobic004G321800--Sobic001G325200 Sobic003G105800 Sobic003G105800 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic002G304000 Sobic002G304000 Sobic003G148800--Sobic002G304000 Sobic003G148800--Sobic005G018500 Sobic003G148800--Sobic001G150600 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic003G366400--Sobic007G219900 Sobic003G401200 Sobic003G401200 Sobic003G366400--Sobic003G401200 Sobic003G366400--Sobic002G215700 Sobic003G366400--Sobic004G260000 Sobic003G366400--Sobic001G227800 Sobic004G246200 Sobic004G246200 Sobic003G366400--Sobic004G246200 Sobic003G366400--Sobic005G018500 Sobic003G366400--Sobic004G101900 Sobic009G211400 Sobic009G211400 Sobic003G366400--Sobic009G211400 Sobic002G190500 Sobic002G190500 Sobic002G324000--Sobic002G190500 Sobic004G113300 Sobic004G113300 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic005G130400 Sobic005G130400 Sobic002G324000--Sobic005G130400 Sobic002G324000--Sobic004G321800 Sobic004G050200 Sobic004G050200 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G184900--Sobic003G087200 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500
Octagon: transcription factors


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