Gene annotation
Transcriptome id Sobic.002G324000.1
Synonym ICL, Sb02g035150
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
isocitrate lyase, putative, expressed
UniProt C5XA58
Pfam PF00463
Panther DB PTHR21631 PTHR21631:SF3
NCBI CDD KOG1260; Isocitrate lyase
KEGG Orthology K01637; E4.1.3.1, isocitrate lyase
Gene Ontology GO:0004451; isocitrate lyase activity


Orthologs (automatic annotation)
TAIR AT3G21720 : isocitrate lyase
RAP-DB (Rice) LOC_Os07g34520.1 : isocitrate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a048257
Brachypodium KQK15932
Barley HORVU2Hr1G045340.1
Wheat TraesCS2A02G219100 , TraesCS2D02G224200 , TraesCS2B02G244600
Populus -


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cDNA sequences
Sobic.002G324000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G190500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
2 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
3 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
4 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
5 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
6 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
7 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.008G182700 thaumatin, putative, expressed -
9 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
10 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.006G100332 - -
13 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
14 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
15 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
16 Sobic.003G105800 No apical meristem protein, putative, expressed -
17 Sobic.003G087200 nuclease PA3, putative, expressed -
18 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
19 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -
20 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -


Gene co-expression network
sample Sobic002G324000 Sobic002G324000 Sobic002G190500 Sobic002G190500 Sobic002G324000--Sobic002G190500 Sobic004G113300 Sobic004G113300 Sobic002G324000--Sobic004G113300 Sobic003G184900 Sobic003G184900 Sobic002G324000--Sobic003G184900 Sobic005G130400 Sobic005G130400 Sobic002G324000--Sobic005G130400 Sobic004G321800 Sobic004G321800 Sobic002G324000--Sobic004G321800 Sobic004G050200 Sobic004G050200 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic002G190500--Sobic002G324000 Sobic002G190500--Sobic004G113300 Sobic002G190500--Sobic005G130400 Sobic002G190500--Sobic004G050200 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic008G079300 Sobic008G079300 Sobic002G190500--Sobic008G079300 Sobic004G113300--Sobic002G324000 Sobic004G113300--Sobic002G190500 Sobic004G113300--Sobic004G050200 Sobic004G113300--Sobic003G184900 Sobic004G113300--Sobic008G079300 Sobic004G113300--Sobic005G130400 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G113300--Sobic004G060900 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500 Sobic005G130400--Sobic002G324000 Sobic005G130400--Sobic002G190500 Sobic005G130400--Sobic004G113300 Sobic005G130400--Sobic004G050200 Sobic002G217133 Sobic002G217133 Sobic005G130400--Sobic002G217133 Sobic006G036900 Sobic006G036900 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic003G148800 Sobic003G148800 Sobic004G321800--Sobic003G148800 Sobic009G226300 Sobic009G226300 Sobic004G321800--Sobic009G226300 Sobic001G325200 Sobic001G325200 Sobic004G321800--Sobic001G325200 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic004G050200--Sobic004G113300 Sobic004G050200--Sobic001G182500 Sobic004G050200--Sobic003G184900 Sobic004G050200--Sobic006G036900 Sobic004G050200--Sobic002G324000 Sobic004G050200--Sobic002G190500 Sobic001G491800 Sobic001G491800 Sobic004G050200--Sobic001G491800 Sobic004G050200--Sobic001G274800 Sobic004G050200--Sobic008G079300 Sobic001G274800--Sobic003G184900 Sobic001G274800--Sobic006G100332 Sobic001G274800--Sobic004G321800 Sobic001G274800--Sobic002G324000 Sobic004G206401 Sobic004G206401 Sobic001G274800--Sobic004G206401 Sobic001G274800--Sobic003G105800 Sobic007G068100 Sobic007G068100 Sobic001G274800--Sobic007G068100 Sobic007G186200 Sobic007G186200 Sobic001G274800--Sobic007G186200 Sobic001G274800--Sobic001G182500 Sobic008G182700--Sobic002G324000 Sobic008G182700--Sobic003G184900 Sobic009G226600 Sobic009G226600 Sobic008G182700--Sobic009G226600 Sobic008G182700--Sobic008G079300 Sobic005G169400 Sobic005G169400 Sobic008G182700--Sobic005G169400 Sobic008G182700--Sobic002G190500 Sobic009G207600 Sobic009G207600 Sobic008G182700--Sobic009G207600 Sobic004G063400 Sobic004G063400 Sobic008G182700--Sobic004G063400 Sobic002G087800 Sobic002G087800 Sobic008G182700--Sobic002G087800 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G060900--Sobic004G321800 Sobic004G060900--Sobic007G068100 Sobic004G060900--Sobic003G148800 Sobic004G060900--Sobic001G325200 Sobic004G060900--Sobic002G324000 Sobic009G229800 Sobic009G229800 Sobic004G060900--Sobic009G229800 Sobic003G428400 Sobic003G428400 Sobic004G060900--Sobic003G428400 Sobic009G057300 Sobic009G057300 Sobic004G060900--Sobic009G057300
Octagon: transcription factors


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