Gene annotation
Transcriptome id Sobic.002G190500.2,Sobic.002G190500.1
Synonym AMY1, ATAMY1, Sb02g023790
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
alpha-amylase precursor, putative, expressed
UniProt A0A1B6QCB0 , A0A1B6QCB6
Pfam PF00128 PF07821 PF07821
Panther DB PTHR10357 PTHR10357:SF172
NCBI CDD -
KEGG Orthology K01176; AMY, amyA, alpha-amylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0005509calcium ion binding GO:0004556alpha-amylase activity GO:0003824catalytic activity GO:0005975carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity


Orthologs (automatic annotation)
TAIR AT4G25000 : alpha-amylase-like
RAP-DB (Rice) LOC_Os06g49970.2 : alpha-amylase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022221 , Zm00025a014064 , Zm00025a046841 , Zm00025a005424
Brachypodium KQJ90515 , KQK17525 , KQK01755
Barley HORVU6Hr1G078420.1 , HORVU6Hr1G078360.2 , HORVU6Hr1G078360.3 , HORVU6Hr1G078360.1 , HORVU7Hr1G091250.8 , HORVU7Hr1G091250.2 , HORVU7Hr1G091250.3 , HORVU7Hr1G091250.1 , HORVU5Hr1G068350.1 , HORVU7Hr1G091250.7 , HORVU7Hr1G091250.4 , HORVU5Hr1G068350.2 , HORVU0Hr1G032850.1 , HORVU0Hr1G032850.2 , HORVU0Hr1G032850.3 , HORVU6Hr1G078330.1 , HORVU0Hr1G032850.5 , HORVU6Hr1G078330.2 , HORVU6Hr1G080790.1 , HORVU6Hr1G080790.2 , HORVU7Hr1G091240.1 , HORVU0Hr1G032700.1 , HORVU7Hr1G091150.1 , HORVU7Hr1G091150.2 , HORVU7Hr1G091250.6 , HORVU0Hr1G032850.4 , HORVU7Hr1G091250.5
Wheat TraesCS6B02G349800 , TraesCS6B02G349700 , TraesCS7D02G380500 , TraesCS6D02G313500 , TraesCS6D02G298500 , TraesCS6A02G334100 , TraesCS5D02G477100 , TraesCS6A02G334200 , TraesCS7A02G384000 , TraesCS6B02G364800 , TraesCS6A02G319300 , TraesCS7B02G286100 , TraesCS6B02G349500 , TraesCS7A02G383200 , TraesCS7D02G380400 , TraesCS7B02G286000 , TraesCS7D02G379700 , TraesCS6D02G313300 , TraesCS7A02G383900 , TraesCS7B02G286700 , TraesCS6B02G364900
Populus -


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cDNA sequences
Sobic.002G190500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
2 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
3 Sobic.005G130400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
4 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
5 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
6 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
7 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
8 Sobic.007G216201 - -
9 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
12 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
13 Sobic.006G036900 vignain precursor, putative, expressed -
14 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.008G182700 thaumatin, putative, expressed -
16 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
17 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.009G207600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dnaJ domain containing protein, expressed -
19 Sobic.009G226600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wax synthase, putative, expressed -
20 Sobic.010G135900 - -


Gene co-expression network
sample Sobic002G190500 Sobic002G190500 Sobic002G324000 Sobic002G324000 Sobic002G190500--Sobic002G324000 Sobic004G113300 Sobic004G113300 Sobic002G190500--Sobic004G113300 Sobic005G130400 Sobic005G130400 Sobic002G190500--Sobic005G130400 Sobic004G050200 Sobic004G050200 Sobic002G190500--Sobic004G050200 Sobic003G184900 Sobic003G184900 Sobic002G190500--Sobic003G184900 Sobic004G345800 Sobic004G345800 Sobic002G190500--Sobic004G345800 Sobic004G321800 Sobic004G321800 Sobic002G190500--Sobic004G321800 Sobic007G216201 Sobic007G216201 Sobic002G190500--Sobic007G216201 Sobic008G079300 Sobic008G079300 Sobic002G190500--Sobic008G079300 Sobic002G324000--Sobic002G190500 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic002G324000--Sobic005G130400 Sobic002G324000--Sobic004G321800 Sobic002G324000--Sobic004G050200 Sobic001G274800 Sobic001G274800 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic004G113300--Sobic002G324000 Sobic004G113300--Sobic002G190500 Sobic004G113300--Sobic004G050200 Sobic004G113300--Sobic003G184900 Sobic004G113300--Sobic008G079300 Sobic004G113300--Sobic005G130400 Sobic004G113300--Sobic001G274800 Sobic003G105800 Sobic003G105800 Sobic004G113300--Sobic003G105800 Sobic004G113300--Sobic004G060900 Sobic005G130400--Sobic002G324000 Sobic005G130400--Sobic002G190500 Sobic005G130400--Sobic004G113300 Sobic005G130400--Sobic004G050200 Sobic002G217133 Sobic002G217133 Sobic005G130400--Sobic002G217133 Sobic006G036900 Sobic006G036900 Sobic005G130400--Sobic006G036900 Sobic008G028800 Sobic008G028800 Sobic005G130400--Sobic008G028800 Sobic004G050200--Sobic004G113300 Sobic001G182500 Sobic001G182500 Sobic004G050200--Sobic001G182500 Sobic004G050200--Sobic003G184900 Sobic004G050200--Sobic006G036900 Sobic004G050200--Sobic002G324000 Sobic004G050200--Sobic002G190500 Sobic001G491800 Sobic001G491800 Sobic004G050200--Sobic001G491800 Sobic004G050200--Sobic001G274800 Sobic004G050200--Sobic008G079300 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic003G184900--Sobic001G182500 Sobic003G061800 Sobic003G061800 Sobic004G345800--Sobic003G061800 Sobic001G474500 Sobic001G474500 Sobic004G345800--Sobic001G474500 Sobic004G345800--Sobic003G184900 Sobic003G388251 Sobic003G388251 Sobic004G345800--Sobic003G388251 Sobic004G345800--Sobic008G079300 Sobic007G068100 Sobic007G068100 Sobic004G345800--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G345800--Sobic004G321800 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic003G148800 Sobic003G148800 Sobic004G321800--Sobic003G148800 Sobic009G226300 Sobic009G226300 Sobic004G321800--Sobic009G226300 Sobic001G325200 Sobic001G325200 Sobic004G321800--Sobic001G325200 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic001G150600 Sobic001G150600 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic001G520400 Sobic001G520400 Sobic007G216201--Sobic001G520400 Sobic007G216201--Sobic002G190500 Sobic007G216201--Sobic002G324000 Sobic007G216201--Sobic004G050200 Sobic007G216201--Sobic004G113300 Sobic007G216201--Sobic004G345800 Sobic007G216201--Sobic003G184900 Sobic007G216201--Sobic008G079300 Sobic007G216201--Sobic004G060900 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic008G079300--Sobic007G225900 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic008G079300--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic008G079300--Sobic009G034700 Sobic008G079300--Sobic001G474500 Sobic008G079300--Sobic001G325200
Octagon: transcription factors


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